Query: NC_004061:166375 Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome
Start: 166375, End: 187197, Length: 20823
Host Lineage: Buchnera aphidicola; Buchnera; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This strain is the symbiont of the aphid Schizaphis graminum and contains a large circular chromosome. Aphid endosymbiont. Almost all aphids contain maternally transmitted bacteriocyte cells, which themselves contain bacteria called Buchnera. The aphids live on a restricted diet (plant sap), rich in carbohydrates, but poor in nitrogenous or other essential compounds. It is believed that the Buchnera provide the essential nutrients the host lacks. Besides a nutritional co-dependence, due to a co-existence of millions of years, Buchnera have lost the ability to produce cell surface components such as lipopolysaccharides. This makes for an obligate endosymbiont relationship between host and Buchnera. Buchnera are prokaryotic cells which belong to the gamma-Proteobacteria, closely related to the Enterobacteriaceae family. Phylogenetic studies using 16S rRNA indicate that the symbiotic relationship was established around 200-250 million years ago. Since Buchnera are closely related to Escherichia coli and Haemophilus influenzae, comparative genomic studies can shed light on the evolutionary mechanisms of intracellular endosymbiosis as well as the different underlying molecular basis between organisms with parasitic behavior and symbionts.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
---|
NC_002528:148274* | 148274 | 176358 | 28085 | Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete | 0 | 1138 | BLASTN svg | BLASTP svg |
NC_004545:141478* | 141478 | 165603 | 24126 | Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome | 1e-91 | 345 | BLASTN svg | BLASTP svg |
NC_015662:110950* | 110950 | 130122 | 19173 | Buchnera aphidicola (Cinara tujafilina) chromosome, complete | 6e-72 | 280 | BLASTN svg | BLASTP svg |
NC_020075:590481 | 590481 | 609502 | 19022 | Candidatus Blochmannia chromaiodes str. 640, complete genome | 2e-53 | 218 | BLASTN svg | BLASTP svg |
NC_007292:586917 | 586917 | 610099 | 23183 | Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome | 1e-48 | 202 | BLASTN svg | BLASTP svg |
NC_005061:524704 | 524704 | 549446 | 24743 | Candidatus Blochmannia floridanus, complete genome | 1e-48 | 202 | BLASTN svg | BLASTP svg |
NC_014909:540000* | 540000 | 564510 | 24511 | Candidatus Blochmannia vafer str. BVAF chromosome, complete genome | 4e-45 | 190 | BLASTN svg | BLASTP svg |
NC_010554:1871000 | 1871000 | 1895024 | 24025 | Proteus mirabilis HI4320, complete genome | 5e-29 | 137 | BLASTN svg | BLASTP svg |
NC_018419:862500 | 862500 | 886099 | 23600 | Secondary endosymbiont of Ctenarytaina eucalypti chromosome, | 2e-22 | 115 | BLASTN svg | BLASTP svg |
NC_014228:2812000 | 2812000 | 2834295 | 22296 | Xenorhabdus nematophila ATCC 19061, complete genome | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_003143:2849377 | 2849377 | 2872099 | 22723 | Yersinia pestis CO92, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_004088:1801819 | 1801819 | 1824253 | 22435 | Yersinia pestis KIM, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_005810:2613456 | 2613456 | 2636099 | 22644 | Yersinia pestis biovar Microtus str. 91001, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_006155:3040769 | 3040769 | 3064099 | 23331 | Yersinia pseudotuberculosis IP 32953, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_008149:2411161 | 2411161 | 2434099 | 22939 | Yersinia pestis Nepal516, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_010159:1861465 | 1861465 | 1884099 | 22635 | Yersinia pestis Angola, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_010465:1724000 | 1724000 | 1746099 | 22100 | Yersinia pseudotuberculosis YPIII, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_010634:2960000 | 2960000 | 2982099 | 22100 | Yersinia pseudotuberculosis PB1/+, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_014259:3369000 | 3369000 | 3389597 | 20598 | Acinetobacter sp. DR1 chromosome, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_010611:797351 | 797351 | 820142 | 22792 | Acinetobacter baumannii ACICU, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_009085:893601 | 893601 | 916572 | 22972 | Acinetobacter baumannii ATCC 17978, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_007204:696972 | 696972 | 720099 | 23128 | Psychrobacter arcticus 273-4, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_008599:128431* | 128431 | 153317 | 24887 | Campylobacter fetus subsp. fetus 82-40, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_018643:1037456* | 1037456 | 1060978 | 23523 | Alpha proteobacterium HIMB5 chromosome, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_014802:1517968 | 1517968 | 1537118 | 19151 | Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, complete | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_008787:1463696 | 1463696 | 1489381 | 25686 | Campylobacter jejuni subsp. jejuni 81-176, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_003912:1629937 | 1629937 | 1655700 | 25764 | Campylobacter jejuni RM1221, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_002163:1471517 | 1471517 | 1514534 | 43018 | Campylobacter jejuni subsp. jejuni NCTC 11168, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_012985:815040* | 815040 | 835707 | 20668 | Candidatus Liberibacter asiaticus str. psy62, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_005966:715591 | 715591 | 738507 | 22917 | Acinetobacter sp. ADP1, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |