Pre_GI: BLASTN Hits

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Query: NC_001263:1378605 Deinococcus radiodurans R1 chromosome 1, complete sequence

Start: 1378605, End: 1402533, Length: 23929

Host Lineage: Deinococcus radiodurans; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This red-pigmented organism's name means "strange berry that withstands radiation", marking the fact that this organism is one of the most radiation-resistant known. It can tolerate radiation levels at 1000 times the levels that would kill a human and it was originally isolated in 1956 from a can of meat that had been irradiated with X-rays. The resistance to radiation may reflect its resistance to dessication, which also causes DNA damage. This organism may be of use in cleaning up toxic metals found at nuclear weapons production sites due to the radiation resistance. This bacterium is also a highly efficient transformer, and can readily take up exogenous DNA from the environment, which may also aid DNA repair. This organism carries multiple copies of many DNA repair genes, suggesting a robust system for dealing with DNA damage. The recombination system may rely on multiple copies of various repeat elements found throughout the genome.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_001263:66266666266668995627291Deinococcus radiodurans R1 chromosome 1, complete sequence03451BLASTN svgBLASTP svg
NC_015161:758929*75892978593127003Deinococcus proteolyticus MRP chromosome, complete genome1e-91345BLASTN svgBLASTP svg
NC_015161:162000*16200018601224013Deinococcus proteolyticus MRP chromosome, complete genome3e-34155BLASTN svgBLASTP svg
NC_012969:2136243*2136243222535089108Methylovorus glucosetrophus SIP3-4 chromosome, complete genome6e-32147BLASTN svgBLASTP svg
NC_014733:2095996*2095996211863222637Methylovorus sp. MP688 chromosome, complete genome2e-25125BLASTN svgBLASTP svg
NC_010725:2589014*2589014261596126948Methylobacterium populi BJ001, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_006677:1255079*1255079128032225244Gluconobacter oxydans 621H, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_014323:46656104665610471710351494Herbaspirillum seropedicae SmR1 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_015733:864959*86495989931634358Pseudomonas putida S16 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013169:25815002581500260290921410Kytococcus sedentarius DSM 20547, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007643:4294818*4294818431506320246Rhodospirillum rubrum ATCC 11170, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_014974:404015*40401542533521321Thermus scotoductus SA-01 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015737:26912462691246276656375318Clostridium sp. SY8519, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_018681:441014*44101447306232049Nocardia brasiliensis ATCC 700358 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015410:1202370*1202370122824825879Pseudomonas mendocina NK-01 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014500:2479814*2479814250755827745Dickeya dadantii 3937 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013446:45116024511602453459922998Comamonas testosteroni CNB-2, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013172:25565172556517257961323097Brachybacterium faecium DSM 4810, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010645:558974*55897458259923626Bordetella avium 197N, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_002929:3305682*3305682333485129170Bordetella pertussis Tohama I, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_007164:2261644*2261644228587624233Corynebacterium jeikeium K411, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007333:32445723244572326976825197Thermobifida fusca YX, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010067:11161481116148113933023183Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-0971.9BLASTN svgBLASTP svg
NC_010617:77491477491482823353320Kocuria rhizophila DC2201, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013508:1491945*1491945152068628742Edwardsiella tarda EIB202, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008578:22267782226778224692120144Acidothermus cellulolyticus 11B, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014210:14403614403616380119766Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,1e-0869.9BLASTN svgBLASTP svg
NC_015125:32840953284095330809924005Microbacterium testaceum StLB037, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015976:24060362406036242731421279Sphingobium sp. SYK-6, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012856:29319952931995295427722283Ralstonia pickettii 12D chromosome 1, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009434:3434381*3434381346411529735Pseudomonas stutzeri A1501, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008595:11766581176658119686720210Mycobacterium avium 104, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_012214:2221702*2221702227363551934Erwinia pyrifoliae Ep1/96, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013521:29245402924540295147426935Sanguibacter keddieii DSM 10542, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013716:1918664*1918664194320924546Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_021066:839734*83973487672436991Raoultella ornithinolytica B6, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003198:1771432*1771432180593534504Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-0763.9BLASTN svgBLASTP svg
NC_009720:3281000*3281000330704926050Xanthobacter autotrophicus Py2, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010694:21380002138000218529147292Erwinia tasmaniensis, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012803:17531381753138177628023143Micrococcus luteus NCTC 2665, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013205:23321742332174235414821975Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,7e-0763.9BLASTN svgBLASTP svg
NC_020211:2882093*2882093291409932007Serratia marcescens WW4, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015740:36783423678342371659938258Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_014391:60008346000834602389723064Micromonospora aurantiaca ATCC 27029 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004578:1190000*1190000121945029451Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-0661.9BLASTN svgBLASTP svg