Pre_GI: BLASTP Hits

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Query: NC_017328:3625000:3644096 Shigella flexneri 2002017 chromosome, complete genome

Start: 3644096, End: 3645370, Length: 1275

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:3550500:3569806356980635710801275Shigella flexneri 5 str. 8401, complete genomehypothetical protein0824
NC_004741:4160500:4163583416358341646081026Shigella flexneri 2a str. 2457T, complete genomehypothetical protein0687
NC_013282:3781149:3786527378652737879301404Cronobacter turicensis, complete genomehypothetical protein4e-41169
NC_020181:4800298:4834154483415448358181665Enterobacter aerogenes EA1509E, complete genomeFIG00510147: hypothetical protein3e-24113
NC_012691:2225000:2228650222865022303471698Tolumonas auensis DSM 9187, complete genomeO-antigen polymerase4e-1479.7
NC_008570:3220539:3225401322540132271311731Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomelipid A core - O-antigen ligase7e-1375.5
NC_009348:1475955:1523408152340815251081701Aeromonas salmonicida subsp. salmonicida A449, complete genomelipid A core - O-antigen ligase2e-1274.3
NC_015424:3112637:3119844311984431214571614Aeromonas veronii B565 chromosome, complete genomelipid A core-O-antigen ligase2e-1273.6
NC_016944:975725:9936779936779949931317Vibrio cholerae IEC224 chromosome I, complete sequencehypothetical protein1e-1068.2
NC_012582:997268:1018813101881310201291317Vibrio cholerae O395 chromosome chromosome I, complete sequencehypothetical protein1e-1068.2
NC_012578:936000:9540719540719553871317Vibrio cholerae M66-2 chromosome I, complete sequencehypothetical protein1e-1068.2
NC_009457:471337:4873944873944887101317Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein1e-1068.2
NC_002505:980595:9966569966569979721317Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein1e-1068.2
NC_017270:885179:9003039003039016191317Vibrio cholerae LMA3984-4 chromosome chromosome I, completeRbmD, Lipid A core antigen ligase2e-1067.8
NC_015633:2327500:2329947232994723312631317Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein5e-0652.8