Pre_GI: BLASTP Hits

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Query: NC_017319:192482:197905 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 197905, End: 198036, Length: 132

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:175200:1802001802001822452046Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence1e-1994.7
NC_007385:157516:1664251664251686262202Shigella sonnei Ss046 plasmid pSS_046, complete sequenceTraD protein2e-1994.7
NC_007608:97092:101798101798102211414Shigella boydii Sb227 plasmid pSB4_227, complete sequencemembrane protein, fragment2e-1994.7
NC_004851:191709:197923197923198108186Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceDNA transport protein6e-1992.8
NC_007607:87000:949619496195374414Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequencehypothetical protein2e-1684.7