Pre_GI: BLASTP Hits

Some Help

Query: NC_017179:4023139:4051022 Clostridium difficile BI1, complete genome

Start: 4051022, End: 4051312, Length: 291

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:4015119:404286440428644043292429Clostridium difficile CD196 chromosome, complete genomehypothetical protein5e-51199
NC_013316:4095905:412365041236504124078429Clostridium difficile R20291, complete genomehypothetical protein5e-51199
NC_009089:428075:430953430953431381429Clostridium difficile 630, complete genomeconjugative transposon conserved hypothetical protein4e-36149
NC_013895:1332832:135403613540361354458423Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completesigma-70, region 47e-1475.9
NC_021175:1597613:160767016076701608092423Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein7e-1475.9
NC_009089:3935500:394063139406313941047417Clostridium difficile 630, complete genomeconjugative transposon protein1e-1375.1
NC_002758:434462:438216438216438698483Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein4e-1373.2
NC_017341:428500:429045429045429527483Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,Sigma-70 Region 4 protein4e-1373.2
NC_017347:424500:425383425383425805423Staphylococcus aureus subsp. aureus T0131 chromosome, completeSigma-70 Region 4 protein4e-1373.2
NC_009089:581655:603157603157603582426Clostridium difficile 630, complete genomeputative conjugative transposon regulatory protein2e-1167.8
NC_013316:2033906:207145420714542071891438Clostridium difficile R20291, complete genomehypothetical protein5e-1166.2
NC_016630:1247251:124944212494421249867426Filifactor alocis ATCC 35896 chromosome, complete genomesigma-70, region 4 superfamily7e-1165.9
NC_012658:3678000:368489736848973685439543Clostridium botulinum Ba4 str. 657 chromosome, complete genomehypothetical protein1e-0962
NC_009089:3889811:389315038931503893572423Clostridium difficile 630, complete genomeconjugative transposon conserved hypothetical protein1e-0755.1