Pre_GI: BLASTP Hits

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Query: NC_017179:4023139:4037042 Clostridium difficile BI1, complete genome

Start: 4037042, End: 4037539, Length: 498

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:4015119:402902240290224029519498Clostridium difficile CD196 chromosome, complete genomeconjugative transposon protein4e-93339
NC_013316:4095905:410980841098084110305498Clostridium difficile R20291, complete genomeconjugative transposon protein4e-93339
NC_009089:3935500:395843439584343958937504Clostridium difficile 630, complete genomeconjugative transposon protein1e-31135
NC_009089:581655:58476958476960656321795Clostridium difficile 630, complete genome5e-31133
NC_009089:428075:448198448198448701504Clostridium difficile 630, complete genomeconjugative tansposon protein7e-30129
NC_009089:581655:589599589599590096498Clostridium difficile 630, complete genomeconjugative transposon protein4e-27120
NC_016630:1247251:126031312603131260810498Filifactor alocis ATCC 35896 chromosome, complete genomeantirestriction protein (ArdA)1e-26119
NC_009089:3889811:390472539047253905222498Clostridium difficile 630, complete genomeputative conjugative transposon antirestriction protein2e-26117
NC_013895:1332832:136497913649791365473495Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeantirestriction protein2e-25115
NC_013316:4095905:411032141103214110824504Clostridium difficile R20291, complete genomeconjugative tranposon protein7e-23106
NC_013315:4015119:402953540295354030038504Clostridium difficile CD196 chromosome, complete genomeconjugative transposon protein7e-23106
NC_017179:4023139:403755540375554038058504Clostridium difficile BI1, complete genomeconjugative transposon protein7e-23106
NC_009089:428075:447677447677448180504Clostridium difficile 630, complete genomeconjugative tranposon protein1e-22105
NC_009089:3935500:395791339579133958416504Clostridium difficile 630, complete genomeconjugative transposon protein3e-22104
NC_017347:424500:439303439303439803501Staphylococcus aureus subsp. aureus T0131 chromosome, completeConjugative transposon protein2e-1892
NC_017341:428500:442965442965443465501Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,putative antirestriction protein2e-1892
NC_002758:434462:449748449748450248501Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein2e-1892
NC_004668:2198027:225899622589962259496501Enterococcus faecalis V583, complete genomehypothetical protein8e-1889.7