Pre_GI: BLASTP Hits

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Query: NC_017179:1683199:1703607 Clostridium difficile BI1, complete genome

Start: 1703607, End: 1704299, Length: 693

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:1679000:169559216955921696284693Clostridium difficile CD196 chromosome, complete genomephage DNA-binding protein5e-131466
NC_009089:1093832:111262111126211113313693Clostridium difficile 630, complete genomeputative phage DNA-binding protein8e-121432
NC_015519:1081539:109554310955431096265723Tepidanaerobacter sp. Re1 chromosome, complete genomephage protein2e-69261
NC_006322:1415863:144051014405101441217708Bacillus licheniformis ATCC 14580, complete genomeYqaS7e-56217
NC_006270:1415001:143964814396481440355708Bacillus licheniformis ATCC 14580, complete genomePutative DNA binding protein7e-56217
NC_014376:1472304:149144514914451492146702Clostridium saccharolyticum WM1 chromosome, complete genomephage protein2e-53208
NC_020244:650109:653955653955654686732Bacillus subtilis XF-1, complete genomeputative DNA binding protein4e-53207
NC_014976:627935:674526674526675245720Bacillus subtilis BSn5 chromosome, complete genomeputative phage-related terminase small subunit1e-52206
NC_009706:2023912:203678020367802037562783Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein1e-51202
NC_021182:554000:571398571398572165768Clostridium pasteurianum BC1, complete genomehypothetical protein3e-51201
NC_014551:576000:595487595487596242756Bacillus amyloliquefaciens DSM 7, complete genomeyqaS; phage-related terminase small subunit6e-51200
NC_017191:2223740:222932922293292230084756Bacillus amyloliquefaciens XH7 chromosome, complete genomeDNA binding protein2e-50199
NC_017188:2221705:222729422272942228049756Bacillus amyloliquefaciens TA208 chromosome, complete genomeyqaS; phage-related terminase small subunit2e-50199
NC_000964:2670288:268882026888202689539720Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein4e-50197
NC_009617:1897887:191596319159631916745783Clostridium beijerinckii NCIMB 8052 chromosome, complete genomephage-related terminase small subunit-like protein1e-49196
NC_020272:2748733:278156827815682782323756Bacillus amyloliquefaciens IT-45, complete genomeDNA binding protein4e-48191
NC_019842:1172944:119214811921481192897750Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,DNA binding protein5e-48190
NC_021171:254000:258661258661259392732Bacillus sp. 1NLA3E, complete genomeputative DNA binding protein1e-47189
NC_015275:986382:988314988314989030717Clostridium lentocellum DSM 5427 chromosome, complete genomePhage terminase small subunit7e-47187
NC_009633:2592000:261453926145392615393855Alkaliphilus metalliredigens QYMF chromosome, complete genomeYqaS7e-40163
NC_019896:1483073:153011915301191530892774Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein1e-38159
NC_009848:2755874:277581927758192776463645Bacillus pumilus SAFR-032, complete genometerminase small subunit3e-36151
NC_003212:2413824:242798024279802428720741Listeria innocua Clip11262, complete genomehypothetical protein2e-30132
NC_013891:1639694:165301716530171653769753Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomephage-related terminase small subunit, putative7e-1477.4
NC_008497:1111891:111633811163381117096759Lactobacillus brevis ATCC 367, complete genomehypothetical protein3e-0755.5
NC_012658:1405788:141285914128591413359501Clostridium botulinum Ba4 str. 657 chromosome, complete genometerminase small subunit1e-0653.5
NC_009697:3110772:312695631269563127447492Clostridium botulinum A str. ATCC 19397 chromosome, completephage terminase small subunit7e-0650.8