Pre_GI: BLASTP Hits

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Query: NC_016582:1639375:1650108 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1650108, End: 1650326, Length: 219

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:5136500:514150251415025141957456Streptomyces violaceusniger Tu 4113 chromosome, complete genometransposase IS4 family protein4e-22103
NC_015957:5182460:520676452067645207273510Streptomyces violaceusniger Tu 4113 chromosome, complete genome5e-1889.7
NC_013595:196493:201841201841202320480Streptosporangium roseum DSM 43021, complete genome1e-1684.7
NC_013595:3541012:355879935587993559269471Streptosporangium roseum DSM 43021, complete genome5e-1476.6
NC_013595:5282207:530459753045975305067471Streptosporangium roseum DSM 43021, complete genome5e-1476.6
NC_003888:8613848:862033986203398620857519Streptomyces coelicolor A3(2), complete genometransposase1e-0858.2
NC_009953:3509229:352087735208773521239363Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein2e-0857.4
NC_010572:8408500:842315384231538424049897Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative IS1647-like transposase3e-0857.4
NC_010572:82000:121881121881122777897Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative IS1647-like transposase3e-0857.4
NC_003155:3994:236752367524559885Streptomyces avermitilis MA-4680, complete genomeIS1647-like transposase1e-0755.1
NC_006361:1547034:155446515544651555343879Nocardia farcinica IFM 10152, complete genomeputative transposase9e-0752.4
NC_006361:1547034:156463115646311565509879Nocardia farcinica IFM 10152, complete genomeputative transposase1e-0652.4
NC_015434:666692:672984672984673898915Verrucosispora maris AB-18-032 chromosome, complete genometransposase IS4 family protein1e-0652.4
NC_008269:577111:588096588096588926831Rhodococcus sp. RHA1 plasmid pRHL1, complete sequenceprobable transposase1e-0652.4
NC_006361:4098469:413085041308504131743894Nocardia farcinica IFM 10152, complete genomeputative transposase1e-0652
NC_010572:82000:875628756288011450Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase2e-0651.2
NC_014151:3611956:363290036329003633433534Cellulomonas flavigena DSM 20109 chromosome, complete genometransposase IS4 family protein3e-0650.4
NC_017186:6395435:644085664408566441359504Amycolatopsis mediterranei S699 chromosome, complete genometransposase IS4 family protein7e-0649.3
NC_017186:5586328:559862155986215599124504Amycolatopsis mediterranei S699 chromosome, complete genometransposase IS4 family protein7e-0649.3