Pre_GI: BLASTP Hits

Some Help

Query: NC_016582:11820671:11842831 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11842831, End: 11844195, Length: 1365

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015671:874500:8980898980898994231335Cellvibrio gilvus ATCC 13127 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1377.8
NC_016582:7737930:7748351774835177497091359Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative substrate-binding transport lipoprotein2e-1377.4
NC_013093:2895511:2906250290625029075991350Actinosynnema mirum DSM 43827, complete genomeextracellular solute-binding protein family 15e-1169.7
NC_013174:309943:3295333295333308551323Jonesia denitrificans DSM 20603, complete genomeextracellular solute-binding protein family 17e-1168.9
NC_011593:391297:3971513971513985601410Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,family 1 extracellular solute-binding protein2e-1067.4
NC_017219:391100:3969663969663983541389Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeputative ABC transporter substrate binding component2e-1067.4
NC_016582:7946000:7952288795228879535861299Streptomyces bingchenggensis BCW-1 chromosome, complete genomeMalE-type ABC sugar transport system periplasmic component6e-0962.8
NC_010407:1775227:1784339178433917856341296Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative substrate-binding transport1e-0861.6
NC_013093:2132284:2140041214004121413601320Actinosynnema mirum DSM 43827, complete genomeextracellular solute-binding protein family 12e-0860.8
NC_004547:913553:9385309385309397951266Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative sugar ABC transporter, periplasmic binding protein3e-0757
NC_011653:1574415:1579050157905015803001251Thermosipho africanus TCF52B, complete genomelactose-binding protein4e-0756.6
NC_015690:7785875:7785875778587577872091335Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-0756.2
NC_012917:833721:8569088569088581731266Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeextracellular solute-binding protein family 16e-0755.8
NC_013421:1038500:1042630104263010438951266Pectobacterium wasabiae WPP163, complete genomeextracellular solute-binding protein family 18e-0755.5
NC_013656:2317224:2320566232056623218101245Lactococcus lactis subsp. lactis KF147, complete genomesugar ABC transporter sugar-binding protein2e-0654.3
NC_013411:2739989:2761338276133827626631326Geobacillus sp. Y412MC61, complete genomeextracellular solute-binding protein family 13e-0653.9
NC_006322:2886404:2908934290893429102381305Bacillus licheniformis ATCC 14580, complete genomeAraN5e-0652.8