Pre_GI: BLASTP Hits

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Query: NC_016445:2012294:2017762 Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete

Start: 2017762, End: 2018622, Length: 861

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae O1 str. 2010EL-1786 (ATCC BAA-2163) is a 2010 outbreak strain of Vibrio cholerae from Haiti. Isolated from stool sample from patient with cholera.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016944:2588435:259390325939032594763861Vibrio cholerae IEC224 chromosome I, complete sequenceLysR family transcriptional regulator2e-167588
NC_012668:1036000:104620110462011047061861Vibrio cholerae MJ-1236 chromosome 1, complete sequenceLysR family transcriptional regulator2e-167588
NC_012582:2626786:263225726322572633117861Vibrio cholerae O395 chromosome chromosome I, complete sequencetranscriptional regulator, LysR family2e-167588
NC_012578:2479150:248462124846212485481861Vibrio cholerae M66-2 chromosome I, complete sequenceLysR family transcriptional regulator2e-167588
NC_002505:2537655:254760525476052548465861Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator, LysR family2e-167588
NC_013521:2254534:226738022673802268306927Sanguibacter keddieii DSM 10542, complete genometranscriptional regulator5e-1065.1
NC_016906:1565868:158542915854291586319891Gordonia polyisoprenivorans VH2 chromosome, complete genomeLysR family transcriptional regulator2e-0963.5
NC_021177:118710:134252134252135148897Streptomyces fulvissimus DSM 40593, complete genomeLysR-family transcriptional regulatory protein7e-0858.2
NC_015563:4093650:411314241131424114005864Delftia sp. Cs1-4 chromosome, complete genomeLysR family transcriptional regulator7e-0858.2
NC_015379:2505233:253862225386222539527906Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, LysR family2e-0756.6
NC_014718:791528:798917798917799834918Burkholderia rhizoxinica HKI 454 chromosome, complete genomeTranscriptional regulators, LysR family2e-0756.6
NC_008687:388262:403185403185404078894Paracoccus denitrificans PD1222 chromosome 2, complete sequencetranscriptional regulator, LysR family4e-0755.5
NC_005085:2014987:204352020435202044464945Chromobacterium violaceum ATCC 12472, complete genomecyn operon transcriptional regulator6e-0755.1
NC_016819:1:466046605610951Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq202,transcriptional regulator7e-0754.7
NC_013716:2476334:248837124883712489297927Citrobacter rodentium ICC168, complete genomeLysR-family transcriptional regulator1e-0654.3
NC_014539:743523:758850758850759758909Burkholderia sp. CCGE1003 chromosome 1, complete sequenceLysR family transcriptional regulator1e-0653.9
NC_010086:1907959:191474219147421915728987Burkholderia multivorans ATCC 17616 chromosome 2, completetranscriptional regulator, LysR family2e-0653.5
NC_010805:530876:559660559660560562903Burkholderia multivorans ATCC 17616 chromosome 2, completeLysR family transcriptional regulator2e-0653.1
NC_012918:356019:357906357906358787882Geobacter sp. M21 chromosome, complete genomeLysR family transcriptional regulator2e-0653.1
NC_017195:517344:548563548563549453891Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeHTH-type transcriptional regulator GltC3e-0652.8
NC_012724:2202173:220217322021732203075903Burkholderia glumae BGR1 chromosome 1, complete genomePutative transcriptional regulator3e-0652.4
NC_009832:1280938:129663112966311297542912Serratia proteamaculans 568, complete genometranscriptional regulator, LysR family9e-0650.8