Pre_GI: BLASTP Hits

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Query: NC_013716:5141269:5153487 Citrobacter rodentium ICC168, complete genome

Start: 5153487, End: 5154065, Length: 579

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:1613595:162479016247901625359570Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-92337
NC_002655:2264773:228093822809382281507570Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-92337
NC_002695:1794635:180567018056701806239570Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-92337
NC_011601:1466496:147770114777011478270570Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector NleF-like protein2e-92337
NC_013008:1715831:172623617262361726805570Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector2e-92337
NC_013361:1754346:176723717672371767806570Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector NleF2e-92337
NC_013353:2272919:228339422833942283963570Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector NleF9e-87318
AP010958:2272919:228339422833942283963570Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector NleF-like protein9e-87318
NC_013364:1997891:200927420092742009630357Escherichia coli O111:H- str. 11128, complete genome4e-51200
NC_017319:192482:220947220947221084138Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein8e-0857