Pre_GI: BLASTP Hits

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Query: NC_013716:1178383:1193525 Citrobacter rodentium ICC168, complete genome

Start: 1193525, End: 1193809, Length: 285

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004431:4319152:434043343404334340855423Escherichia coli CFT073, complete genomehypothetical protein6e-26115
NC_008253:3161311:317558731755873175829243Escherichia coli 536, complete genomehypothetical protein1e-25115
NC_013364:3701895:375823437582343758431198Escherichia coli O111:H- str. 11128, complete genomehypothetical protein1e-25114
NC_013361:5580741:558294855829485583190243Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-25114
NC_011745:5114500:511808851180885118330243Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-25114
NC_011745:3405520:342589034258903426132243Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-25114
NC_008253:4817864:483667148366714836913243Escherichia coli 536, complete genomehypothetical protein3e-25113
NC_007946:4875997:489621848962184896415198Escherichia coli UTI89, complete genomehypothetical protein2e-24110
NC_017328:3088907:313770131377013137898198Shigella flexneri 2002017 chromosome, complete genomehypothetical protein3e-24110
NC_004337:3049118:309799630979963098193198Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-24110
NC_008253:334467:359668359668359910243Escherichia coli 536, complete genomehypothetical protein4e-24109
NC_013716:5201097:521959152195915219788198Citrobacter rodentium ICC168, complete genomehypothetical protein6e-24109
NC_011083:4547825:456442045644204564617198Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein1e-23108
AP010958:3669500:367322336732233673420198Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein9e-24108
NC_013353:3669500:367322336732233673420198Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein9e-24108
NC_008563:4707826:470782647078264708248423Escherichia coli APEC O1, complete genomehypothetical protein3e-23107
NC_011750:4390000:441361544136154414037423Escherichia coli IAI39 chromosome, complete genomehypothetical protein4e-23106
NC_007946:1119000:114125011412501141447198Escherichia coli UTI89, complete genomehypothetical protein1e-22105
NC_012967:3769499:379492337949233795165243Escherichia coli B str. REL606 chromosome, complete genomeAec783e-2097.4
NC_012947:44512:492724927249469198Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-1994.4
NC_013941:4470932:447460444746044474819216Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-1891.7
NC_009801:4882684:488659348865934886769177Escherichia coli E24377A, complete genomehypothetical protein1e-1891.7
NC_013008:4643825:464382546438254644022198Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-1788.6
NC_002695:4584177:458468045846804584877198Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-1788.6
NC_002655:4653160:465366346536634653860198Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933L1e-1788.6