Pre_GI: BLASTP Hits

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Query: NC_012660:5242392:5256192 Pseudomonas fluorescens SBW25 chromosome, complete genome

Start: 5256192, End: 5256599, Length: 408

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Isolated in 1989 from the leaf surface of a sugar beet plant grown at the University Farm, Wytham, Oxford, UK. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010995:4297361:431397843139784314382405Cellvibrio japonicus Ueda107, complete genomePIN (PilT N terminus) domain3e-50196
NC_010278:1918000:192941819294181929816399Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,nucleic acid-binding protein3e-43173
NC_010939:1986263:199298919929891993387399Actinobacillus pleuropneumoniae serovar 7 str. AP76, completehypothetical protein5e-42169
NC_009053:1942973:196811919681191968505387Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein7e-42169
NC_017319:192482:198045198045198443399Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceplasmid maintenance protein1e-39161
NC_004851:191709:198117198117198515399Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceplasmid maintenance protein1e-39161
NC_003198:3042000:305138830513883051786399Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein (assiciated with virulence)1e-38158
NC_004631:3030580:303729530372953037693399Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-38158
NC_016832:3020000:302593530259353026333399Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,PilT protein domain protein1e-38158
NC_012912:4167429:417212441721244172528405Dickeya zeae Ech1591, complete genomePilT protein domain protein1e-37155
NC_015581:1043394:105384510538451054243399Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomePilT protein domain-containing protein2e-37154
NC_015740:2407500:242307824230782423482405Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein1e-36151
NC_002939:2697767:271099627109962711397402Geobacter sulfurreducens PCA, complete genomevirulence associated protein C6e-31132
NC_013862:27991:626862686675408Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequencePilT protein domain protein1e-29127
NC_013205:644914:649702649702650109408Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,PilT protein domain protein4e-28123
NC_010842:2310756:232995223299522330350399Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomeVapC-like nucleic acid-binding protein2e-26117
NC_010602:2244729:232456623245662324964399Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'PilT protein2e-26117
NC_015578:61820:691206912069557438Treponema primitia ZAS-2 chromosome, complete genomeputative virulence-associated protein2e-24111
NC_015578:3980496:401721640172164017653438Treponema primitia ZAS-2 chromosome, complete genomevirulence associated protein C5e-24109
NC_012751:409333:428549428549428965417Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeaddiction module, PIN domain protein2e-22104
NC_016860:3995445:401015640101564010572417Salmonella enterica subsp. enterica serovar Typhimurium strVagD5e-22103
NC_013161:4093322:410215241021524102553402Cyanothece sp. PCC 8802, complete genomePilT protein domain protein1e-2098.6
NC_011662:1160887:116418911641891164608420Thauera sp. MZ1T, complete genomePilT protein domain protein8e-2095.9
NC_014722:1191380:120180312018031202216414Burkholderia rhizoxinica HKI 454, complete genomeVIRULENCE-ASSOCIATED PROTEIN C1e-1995.1
NC_005125:4557889:457538145753814575791411Gloeobacter violaceus PCC 7421, complete genomevirulence-associated protein VapC homolog1e-1994.7
NC_007507:101887:111429111429111830402Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,hypothetical protein1e-1994.7
NC_013285:1:177271772718143417Cronobacter turicensis plasmid pCTU3, complete sequencehypothetical protein3e-1993.6
NC_018000:2964500:296931229693122969749438Sinorhizobium fredii USDA 257 chromosome, complete genomeNtrR2 PIN domain-containing protein7e-1992.4
NC_011901:1398376:141724714172471417669423Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completePilT protein domain-containing protein1e-1892
NC_019902:1:138671386714271405Thioalkalivibrio nitratireducens DSM 14787, complete genomeVapC toxin protein7e-1889.4
NC_012731:3411161:343273634327363433152417Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative DNA binding protein6e-1889.4
NC_015942:1711026:171449517144951714905411Acidithiobacillus ferrivorans SS3 chromosome, complete genomePilT protein domain-containing protein7e-1889
NC_017098:32196:503285032850723396Spirochaeta africana DSM 8902 chromosome, complete genomeputative nucleic acid-binding protein, contains PIN domain4e-1786.7
NC_012560:3667177:368595936859593686369411Azotobacter vinelandii DJ, complete genomePilT domain-containing protein4e-1786.7
NC_021150:3667176:368595836859583686368411Azotobacter vinelandii CA6, complete genomePilT domain-containing protein4e-1786.7
NC_015942:2213710:222199022219902222394405Acidithiobacillus ferrivorans SS3 chromosome, complete genomePilT protein domain-containing protein1e-1685.1
NC_012752:1:789078908285396Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmidputative addiction module, PIN domain protein8e-1682.4
NC_015382:266000:274647274647275057411Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequencePIN domain protein1e-1478.6
NC_008789:835909:877016877016877303288Halorhodospira halophila SL1, complete genomePilT protein-like protein4e-1476.6
NC_013889:1623697:163398116339811634379399Thioalkalivibrio sp. K90mix chromosome, complete genomePilT protein domain protein5e-1476.3
NC_006513:881120:901787901787902134348Azoarcus sp. EbN1, complete genomeconserved hypothetical protein, similar to virulence-associated protein VapC6e-1476.3
NC_014228:4408500:442340844234084423797390Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein (with PilT protein domain)2e-1374.7
NC_009615:4425500:445163544516354452045411Parabacteroides distasonis ATCC 8503 chromosome, complete genomeDNA binding protein2e-1271.6
NC_011761:2344408:235943323594332359819387Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completePIN domain-containing protein2e-1270.9
NC_010831:40000:577155771558161447Chlorobium phaeobacteroides BS1, complete genomePilT protein domain protein2e-1270.9
NC_012751:942315:953691953691954098408Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeaddiction module,PIN domain protein5e-1269.7
NC_011206:2239109:225417922541792254520342Acidithiobacillus ferrooxidans ATCC 53993, complete genomePilT protein domain protein1e-1168.6
NC_015510:2487617:249169624916962492112417Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomePilT protein domain-containing protein6e-1166.2
NC_009439:1174432:118093511809351181354420Pseudomonas mendocina ymp, complete genomePilT domain-containing protein3e-1063.9
NC_017276:774690:780110780110780502393Sulfolobus islandicus REY15A chromosome, complete genomeVapC-type toxin5e-0959.7
NC_009511:2921448:294077129407712941145375Sphingomonas wittichii RW1 chromosome, complete genomePilT domain-containing protein1e-0858.9
NC_017059:1727095:173726917372691737694426Rhodospirillum photometricum DSM 122, complete genomePutative plasmid stability-like protein2e-0858.2
NC_006576:2683467:202620262481456Synechococcus elongatus PCC 6301, complete genomesimilar to plasmid stabilization protein StbB homolog2e-0857.8
NC_007604:1586243:160105616010561601511456Synechococcus elongatus PCC 7942, complete genomeplasmid stabilization protein StbB-like2e-0857.8
NC_011761:1155636:117746311774631177891429Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeplasmid stability protein4e-0856.6
NC_019902:1061432:109048510904851090715231Thioalkalivibrio nitratireducens DSM 14787, complete genome1e-0755.1
NC_017080:1981788:200000020000002000299300Phycisphaera mikurensis NBRC 102666, complete genomehypothetical protein3e-0753.9
NC_013730:4811911:482453148245314824944414Spirosoma linguale DSM 74, complete genomePilT protein domain protein5e-0753.1
NC_015510:4982255:500616850061685006557390Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomePilT protein domain-containing protein2e-0651.2