Pre_GI: BLASTP Hits

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Query: NC_012125:4559990:4575681 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4575681, End: 4577246, Length: 1566

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:4482437:4498105449810544996941590Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein0978
NC_003198:4513900:4527028452702845286171590Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein0978
NC_004631:4494000:4509837450983745114261590Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein0978
NC_009832:4564752:4573178457317845748871710Serratia proteamaculans 568, complete genomeRelaxase5e-64245
NC_005126:1315474:1348802134880213503341533Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein8e-64244
NC_004547:667988:6856966856966872941599Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-48193
NC_013421:701005:7426947426947441511458Pectobacterium wasabiae WPP163, complete genomeprotein of unknown function DUF15282e-44180
NC_012779:346998:3771273771273787191593Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-42174
NC_010554:2789722:2795085279508527966771593Proteus mirabilis HI4320, complete genomehelicase1e-42174
NC_009832:4482500:4487979448797944896611683Serratia proteamaculans 568, complete genomeRelaxase9e-41168
NC_014029:331919:3999813999814016901710Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-38161
NC_012214:537000:5558525558525573541503Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein5e-37155
NC_009832:426993:4482924482924500041713Serratia proteamaculans 568, complete genomeRelaxase2e-36154
NC_016816:4129299:4129299412929941308431545Pantoea ananatis LMG 5342, complete genomeputative helicase/relaxase3e-36153
NC_016845:4498097:4504028450402845053171290Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein4e-33143
NC_009801:3374501:3374501337450133761561656Escherichia coli E24377A, complete genomehelicase/Zfx / Zfy transcription activation region domain protein1e-32141
NC_013892:1503162:151686915168691517762894Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein6e-32139
NC_014228:3391500:339158733915873392480894Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein1e-31138
NC_013971:3117000:3117124311712431185631440Erwinia amylovora ATCC 49946 chromosome, complete genomemembrane protein6e-25115
NC_007005:1605000:1609367160936716112711905Pseudomonas syringae pv. syringae B728a, complete genomeProtein of unknown function DUF1528:Relaxase7e-23108
NC_015740:1291739:1291739129173912935951857Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein7e-23108
NC_008825:2564965:2568977256897725708151839Methylibium petroleiphilum PM1, complete genomehypothetical protein5e-22106
NC_011662:1017933:1022284102228410241341851Thauera sp. MZ1T, complete genomeRelaxase6e-22105
NC_010501:3671517:3679488367948836811971710Pseudomonas putida W619, complete genomeRelaxase1e-21105
NC_012880:3529017:3551393355139335528291437Dickeya dadantii Ech703, complete genomeprotein of unknown function DUF15281e-21104
NC_012913:1041969:1061129106112910630151887Aggregatibacter aphrophilus NJ8700, complete genomerelaxase2e-21104
NC_007005:830467:838293838293839249957Pseudomonas syringae pv. syringae B728a, complete genomeRelaxase8e-21102
NC_012660:2045398:2091920209192020936441725Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein1e-20101
NC_004578:895019:9009889009889029161929Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-20101
NC_009656:4527457:4570189457018945721081920Pseudomonas aeruginosa PA7 chromosome, complete genomerelaxase2e-20101
NC_007492:3462929:3471454347145434731811728Pseudomonas fluorescens PfO-1, complete genomehypothetical protein3e-20100
NC_009656:4527457:4655680465568046576111932Pseudomonas aeruginosa PA7 chromosome, complete genomerelaxase3e-20100
NC_016830:3869572:3883326388332638850501725Pseudomonas fluorescens F113 chromosome, complete genomerelaxase4e-2099.8
NC_007086:1224867:1249163124916312501851023Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein6e-2099.4
NC_003902:3666544:3697611369761136986331023Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein6e-2099.4
NC_012912:483390:4914434914434932421800Dickeya zeae Ech1591, complete genomeRelaxase1e-1998.6
NC_009512:3334579:3342578334257833443651788Pseudomonas putida F1, complete genomeRelaxase1e-1998.6
NC_010688:2850164:2856463285646328583911929Xanthomonas campestris pv. campestris, complete genomehypothetical protein1e-1998.2
NC_010170:1152131:1155741115574111576031863Bordetella petrii, complete genomeputative helicase1e-1998.2
NC_010170:1551923:1557786155778615596331848Bordetella petrii, complete genomeputative helicase2e-1997.4
NC_010067:3056774:3073338307333830749571620Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-1997.1
NC_006513:1379735:1423016142301614248301815Azoarcus sp. EbN1, complete genomehypothetical protein3e-1997.1
NC_008344:49039:6932869328711931866Nitrosomonas eutropha C91, complete genomeRelaxase3e-1997.1
NC_015379:2417312:2429114242911424309311818Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein5e-1996.3
NC_014640:1179382:1185130118513011870071878Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein8e-1995.5
NC_008782:1308007:1323801132380113256841884Acidovorax sp. JS42, complete genomeRelaxase8e-1995.5
NC_012691:2614603:2677917267791726797731857Tolumonas auensis DSM 9187, complete genomeRelaxase2e-1894.4
NC_014532:3596097:3630268363026836321421875Halomonas elongata DSM 2581, complete genomerelaxase3e-1893.6
NC_014910:4207227:4208814420881442106761863Alicycliphilus denitrificans BC chromosome, complete genomerelaxase5e-1893.2
NC_017986:409899:4169414169414186681728Pseudomonas putida ND6 chromosome, complete genomerelaxase5e-1893.2
NC_013421:1744928:1754222175422217560031782Pectobacterium wasabiae WPP163, complete genomeRelaxase4e-1893.2
NC_010002:4572573:4579413457941345812661854Delftia acidovorans SPH-1, complete genomeRelaxase6e-1892.8
NC_015726:2862500:2869564286956428714081845Cupriavidus necator N-1 chromosome 1, complete sequencehypothetical protein8e-1892.4
NC_004129:5481629:5489951548995154918371887Pseudomonas fluorescens Pf-5, complete genomehypothetical protein1e-1791.7
NC_015733:2581324:2624808262480826265351728Pseudomonas putida S16 chromosome, complete genomerelaxase2e-1790.9
NC_011149:4677412:4680855468085546821711317Salmonella enterica subsp. enterica serovar Agona str. SL483,5e-1789.7
NC_009792:3245368:3263530326353032647921263Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-1687.4
NC_012560:3698697:3718384371838437202791896Azotobacter vinelandii DJ, complete genomeRelaxase-related protein3e-1687
NC_021150:3698696:3718383371838337202781896Azotobacter vinelandii CA6, complete genomeRelaxase-related protein3e-1687
NC_013716:3512950:3518153351815335197721620Citrobacter rodentium ICC168, complete genomehypothetical protein4e-1686.7
NC_012731:560199:5776945776945792861593Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein9e-1582
NC_009648:5119271:5133416513341651350051590Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein3e-1480.5
NC_002488:1638946:1671676167167616735261851Xylella fastidiosa 9a5c, complete genomehypothetical protein3e-1480.1
NC_013416:820989:826945826945827487543Aggregatibacter actinomycetemcomitans D11S-1, complete genomerelaxase5e-1169.7
NC_005773:4282840:4312613431261343141211509Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein2e-0860.8
NC_009434:3611738:3686311368631136875551245Pseudomonas stutzeri A1501, complete genomeHD-superfamily hydrolase6e-0859.3
NC_008739:41793:5382653826557001875Marinobacter aquaeolei VT8 plasmid pMAQU02, complete sequenceRelaxase2e-0757.8