Pre_GI: BLASTP Hits

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Query: NC_012125:2938519:2981955 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2981955, End: 2982449, Length: 495

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:2967464:301266530126653013159495Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-93340
NC_016831:2867766:290997029099702910464495Salmonella enterica subsp. enterica serovar Gallinarum/pullorummembrane protein5e-93339
NC_011294:2919906:293270629327062933200495Salmonella enterica subsp. enterica serovar Enteritidis strmembrane protein5e-93339
NC_006905:2987863:300157330015733002067495Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein5e-93339
NC_011080:2982346:302619430261943026688495Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein2e-92337
NC_011205:3078732:309243730924373092931495Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-92337
NC_011274:2909799:292351029235102924004495Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein7e-92335
NC_011149:2912219:295810229581022958596495Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein1e-91334
NC_011094:2913500:295493629549362955457522Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-1477.8
NC_003197:3005842:304959930495993050120522Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein3e-1477.4
NC_016810:3028421:307217530721753072696522Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-1477.4
NC_016856:3026426:306983630698363070357522Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein3e-1477.4
NC_016857:3028421:307217530721753072696522Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein3e-1477.4
NC_016863:2974333:301808930180893018610522Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein3e-1477.4
NC_016860:3029272:307302930730293073214186Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein8e-1476.3
NC_011083:3009760:302420430242043024389186Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein8e-1476.3
NC_011147:2814664:285814428581442858329186Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-1373.6
NC_004631:2872192:288592328859232886108186Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein5e-1373.6
NC_006511:2819128:286260828626082862793186Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein5e-1373.6
NC_003198:2856596:290006629000662900251186Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein5e-1373.6
NC_017046:3027161:307091530709153071022108Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein7e-1269.7