Pre_GI: BLASTP Hits

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Query: NC_012125:1360593:1369880 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1369880, End: 1371631, Length: 1752

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:401154:4082234082234099831761Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein0778
NC_011083:403022:4109664109664129692004Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,bifunctional tail protein3e-59229
NC_016860:397138:4051284051284071312004Salmonella enterica subsp. enterica serovar Typhimurium strtail spike protein2e-58227
NC_011205:645591:6535126535126555152004Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853bifunctional tail protein2e-58227
NC_011147:2463299:2485113248511324871162004Salmonella enterica subsp. enterica serovar Paratyphi A strtailspike2e-58227
NC_006511:2467763:2489577248957724915802004Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtailspike2e-58227
NC_013364:2612822:2618953261895326208901938Escherichia coli O111:H- str. 11128, complete genomeputative tail spike protein8e-50198
NC_011740:2072173:2082356208235620847942439Escherichia fergusonii ATCC 35469, complete genomeputative head-binding domain of phage tailspike protein9e-49195
NC_011742:2489000:2495794249579424987392946Escherichia coli S88 chromosome, complete genomeEndo-alpha-sialidase, phage head protein3e-48193
NC_008563:2565876:2572697257269725756422946Escherichia coli APEC O1, complete genomeputative endo-alpha-sialidase3e-48193
NC_011748:2655989:2668877266887726708561980Escherichia coli 55989, complete genomehypothetical protein; putative head-binding domain1e-47191
CU928145:2655989:2668877266887726708561980Escherichia coli 55989 chromosome, complete genomehypothetical protein; putative head-binding domain1e-47191
NC_007946:2593500:2599874259987426028192946Escherichia coli UTI89, complete genomeendo-alpha-sialidase2e-47191
NC_013361:3254000:3266980326698032691032124Escherichia coli O26:H11 str. 11368 chromosome, complete genometailspike protein1e-46188
NC_010067:2529750:2562294256229425644442151Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-45183
NC_016902:1475521:1482804148280414850022199Escherichia coli KO11FL chromosome, complete genomeP22 tailspike protein head-binding protein5e-45182
CP002516:1475521:1482804148280414850022199Escherichia coli KO11, complete genomeP22 tailspike protein head-binding protein5e-45182
CP002185:2608000:2620855262085526230532199Escherichia coli W, complete genomehypothetical protein5e-45182
NC_017328:335160:3430893430893442431155Shigella flexneri 2002017 chromosome, complete genomeTail spike protein5e-43176
NC_020418:3102460:3110149311014931120861938Morganella morganii subsp. morganii KT, complete genometail protein4e-41169
NC_009800:320115:3302403302403321501911Escherichia coli HS, complete genomehypothetical protein6e-32139
NC_012214:1588573:1600576160057616027682193Erwinia pyrifoliae Ep1/96, complete genomeExopolysaccharide biosynthesis protein WceF (synonym for CpsF; similar to AmsF)6e-1479.7
NC_013961:2260250:2284358228435822865892232Erwinia amylovora, complete genomeAmylovoran biosynthesis protein amsF precursor1e-1379
NC_013971:2297777:2321885232188523241162232Erwinia amylovora ATCC 49946 chromosome, complete genomeamylovoran biosynthesis protein1e-1379
NC_014837:2803447:2826372282637228285822211Pantoea sp. At-9b chromosome, complete genomeP22 tailspike protein head-binding protein3e-1273.9
NC_014562:2049921:2074597207459720768132217Pantoea vagans C9-1 chromosome, complete genomeExtracellular polysaccharide biosynthesis protein wceF precursor3e-1273.9
NC_010694:1502019:1502019150201915042412223Erwinia tasmaniensis, complete genomeExopolysaccharide biosynthesis protein7e-1169.3
NC_013956:2749685:2777710277771027799202211Pantoea ananatis LMG 20103 chromosome, complete genomeAmsF1e-1068.6
NC_016816:1676460:1676460167646016786702211Pantoea ananatis LMG 5342, complete genomeextracellular polysaccharide biosynthesis glycosyltransferase1e-1068.6