Pre_GI: BLASTP Hits

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Query: NC_012125:1360593:1365751 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1365751, End: 1367046, Length: 1296

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011083:403022:4063354063354076001266Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein0756
NC_011205:645591:6488726488726501761305Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein4e-150531
NC_013361:3254000:3271906327190632733121407Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA injection protein3e-117422
CP002185:2608000:2625522262552226269101389Escherichia coli W, complete genomehypothetical protein4e-117421
CP002516:1475521:1478947147894714803351389Escherichia coli KO11, complete genomeDNA transfer protein GP204e-117421
NC_016902:1475521:1478947147894714803351389Escherichia coli KO11FL chromosome, complete genomeDNA transfer protein GP204e-117421
NC_013364:2612822:2625381262538126267871407Escherichia coli O111:H- str. 11128, complete genomeputative DNA injection protein1e-116420
NC_017328:335160:3385863385863400131428Shigella flexneri 2002017 chromosome, complete genomeputative phage injection protein3e-110399
NC_011740:2072173:2086768208676820881801413Escherichia fergusonii ATCC 35469, complete genomeputative DNA transfer protein gp203e-85315
NC_002655:3260500:3264432326443232655681137Escherichia coli O157:H7 EDL933, complete genomeputative prophage DNA injection protein8e-79294
NC_002695:3189425:3194476319447631956121137Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA injection protein8e-79294
NC_011353:3276734:3298592329859232997281137Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDNA injection protein8e-79294
NC_013008:3231414:3253463325346332545991137Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeprophage DNA injection protein8e-79294
NC_013941:2928000:2935542293554229366781137Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeprophage DNA injection protein8e-79294
NC_020418:3102460:3116004311600431173921389Morganella morganii subsp. morganii KT, complete genomehypothetical protein2e-71270
NC_007712:1516589:1542764154276415442871524Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein8e-56218
NC_011742:2489000:2504655250465525061061452Escherichia coli S88 chromosome, complete genomeDNA transfer protein8e-54211
NC_008563:2565876:2581558258155825830091452Escherichia coli APEC O1, complete genomeputative phage injection protein8e-54211
NC_006905:401154:4044044044044057231320Salmonella enterica subsp. enterica serovar Choleraesuis strDNA transfer protein gp202e-51203
NC_010067:2529750:2566613256661325679531341Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-50198
NC_009800:320115:3222293222293236141386Escherichia coli HS, complete genomeputative DNA transfer protein2e-47189
NC_007946:2593500:2608434260843426097831350Escherichia coli UTI89, complete genomeDNA transfer protein1e-44181
NC_016860:397138:4008794008794023151437Salmonella enterica subsp. enterica serovar Typhimurium strDNA transfer protein3e-36152
CU928145:2655989:2676624267662426779671344Escherichia coli 55989 chromosome, complete genomeDNA transfer protein gp202e-35150
NC_011748:2655989:2676624267662426779671344Escherichia coli 55989, complete genomeDNA transfer protein gp202e-35150