Pre_GI: BLASTP Hits

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Query: NC_012125:1330066:1352644 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1352644, End: 1352961, Length: 318

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:303987:325292325292325615324Shigella flexneri 2002017 chromosome, complete genomeS protein1e-54211
NC_009800:289000:309172309172309495324Escherichia coli HS, complete genomephage holin, lambda family1e-54211
NC_006905:368942:391363391363391686324Salmonella enterica subsp. enterica serovar Choleraesuis strholin-like protein1e-54211
NC_012947:3015985:301690330169033017226324Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephage holin, lambda family9e-54208
NC_006511:2501500:250893825089382509264327Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCClysis (holin)1e-48191
NC_011147:2496808:250447425044742504800327Salmonella enterica subsp. enterica serovar Paratyphi A strholin1e-48191
NC_011205:609464:634928634928635254327Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage holin, lambda family1e-48191
NC_010067:2529750:258053225805322580855324Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-48189
NC_011283:2836000:289803028980302898353324Klebsiella pneumoniae 342 chromosome, complete genomephage holin, lambda family9e-44175
NC_013892:3803278:382638538263853826711327Xenorhabdus bovienii SS-2004 chromosome, complete genomeHolin (Lysis protein 13)2e-25114
NC_012214:1974500:198806919880691988404336Erwinia pyrifoliae Ep1/96, complete genomeSimilar to phage lysis protein S6e-1062.8
NC_011770:860944:881354881354881686333Pseudomonas aeruginosa LESB58, complete genomeHolin, phage lambda9e-0648.9