Pre_GI: BLASTP Hits

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Query: NC_012125:1330066:1344027 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1344027, End: 1344365, Length: 339

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011205:609464:625524625524625856333Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853gp545e-50196
NC_016860:364981:377118377118377420303Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-35147
NC_011147:2496808:251431725143172514619303Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein8e-35145
NC_006511:2501500:251878125187812519083303Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein8e-35145
NC_011740:2072173:211210021121002112525426Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein from phage origin6e-32135
NC_006905:368942:382199382199382501303Salmonella enterica subsp. enterica serovar Choleraesuis strantitermination protein2e-29127
NC_013282:1200993:121313312131331213474342Cronobacter turicensis, complete genomeProbable regulatory protein N3e-29127
NC_009778:2993218:301767730176773018009333Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-26118
NC_011751:1405381:141741414174141417806393Escherichia coli UMN026 chromosome, complete genomeputative regulatory protein N7e-22102
NC_011601:717072:728867728867729175309Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeearly gene regulator3e-21100
NC_017328:303987:316980316980317288309Shigella flexneri 2002017 chromosome, complete genomeantitermination of transcription at nut site protein6e-2199.4
NC_013361:3112023:313081031308103131115306Escherichia coli O26:H11 str. 11368 chromosome, complete genomeearly gene regulator N5e-0650.1
NC_009800:289000:300820300820301125306Escherichia coli HS, complete genomehypothetical protein5e-0650.1
NC_013941:3300000:330358633035863303921336Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein5e-0649.7