Pre_GI: BLASTP Hits

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Query: NC_011961:891815:891815 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Start: 891815, End: 892588, Length: 774

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014738:55782:557825578256504723Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,demethylmenaquinone methyltransferase3e-45182
NC_013132:8871718:887297688729768873710735Chitinophaga pinensis DSM 2588, complete genomeubiquinone/menaquinone biosynthesis methyltransferase2e-42172
NC_011725:1486635:149795314979531498666714Bacillus cereus B4264 chromosome, complete genomeubiquinone/menaquinone biosynthesis methyltransferase1e-37156
NC_020054:1666263:168589216858921686620729Fibrella aestuarina BUZ 2 drat genomeubiquinone/menaquinone biosynthesis methyltransferase4e-37154
NC_015697:116000:132686132686133387702Lactobacillus reuteri SD2112 chromosome, complete genome2-heptaprenyl-1,4-naphthoquinone methyltransferase6e-37154
NC_018524:2711817:271903627190362719746711Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeubiquinone/menaquinone biosynthesis methyltransferase family protein9e-37153
NC_011060:459615:475244475244475993750Pelodictyon phaeoclathratiforme BU-1, complete genomeubiquinone/menaquinone biosynthesis methyltransferase7e-35147
NC_010524:3914880:392596439259643926695732Leptothrix cholodnii SP-6, complete genomeubiquinone/menaquinone biosynthesis methyltransferase7e-35147
NC_013642:545464:549680549680550342663Thermotoga naphthophila RKU-10, complete genomeubiquinone/menaquinone biosynthesis methyltransferase4e-34145
NC_014211:174694:191082191082191792711Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidubiquinone/menaquinone biosynthesis methyltransferase3e-34145
NC_009486:155651:171626171626172288663Thermotoga petrophila RKU-1 chromosome, complete genomeubiquinone/menaquinone biosynthesis methyltransferase9e-34144
NC_008825:2889933:290932829093282910059732Methylibium petroleiphilum PM1, complete genomeputative ubiquinone/menaquinone biosynthesis methyltransferase protein3e-33142
NC_009446:473960:477541477541478302762Dichelobacter nodosus VCS1703A, complete genomeubiquinone-menaquinone biosynthesis methyltransferase3e-33142
NC_013943:2857751:287382428738242874513690Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeubiquinone/menaquinone biosynthesis methyltransferase5e-33141
NC_016893:135845:135845135845136591747Wigglesworthia glossinidia endosymbiont of Glossina morsitans2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/S-adenosylmethionine:2-DMK methyltransferase1e-32139
NC_009952:3522370:354111435411143541866753Dinoroseobacter shibae DFL 12, complete genome2-polyprenylmethoxybenozoquinol methylase2e-32139
NC_013525:556036:562211562211562939729Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeubiquinone/menaquinone biosynthesis methyltransferase4e-32138
NC_000853:771746:775962775962776651690Thermotoga maritima MSB8, complete genomeubiquinone/menaquinone biosynthesis methyltransferase, putative4e-32138
NC_016622:82418:885768857689394819Azospirillum lipoferum 4B, complete genomeUbiquinone/menaquinone biosynthesis methyltransferase4e-32138
NC_021172:3786725:380404838040483804827780Hyphomicrobium denitrificans 1NES1, complete genomeubiquinone/menaquinone biosynthesis methyltransferase2e-30132
NC_009667:1371924:139249213924921393283792Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceubiquinone/menaquinone biosynthesis methyltransferase2e-30132
NC_014313:3617910:363484536348453635627783Hyphomicrobium denitrificans ATCC 51888 chromosome, completeubiquinone/menaquinone biosynthesis methyltransferase3e-30132
NC_015717:4736500:475278047527804753568789Hyphomicrobium sp. MC1, complete genomeUbiquinone/menaquinone biosynthesis methyltransferase ubiE4e-29128
NC_011894:7109374:712853671285367129294759Methylobacterium nodulans ORS 2060, complete genomeubiquinone/menaquinone biosynthesis methyltransferase1e-28127
NC_018145:147759:157182157182157910729Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeubiquinone/menaquinone biosynthesis methyltransferase ubiE4e-28125
NC_011901:39215:581085810858857750Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeubiquinone/menaquinone biosynthesis methyltransferase3e-28125
NC_013520:571647:577089577089577835747Veillonella parvula DSM 2008, complete genomeubiquinone/menaquinone biosynthesis methyltransferase2e-28125
NC_010118:207843:210291210291211019729Candidatus Sulcia muelleri GWSS, complete genomeubiquinone/menaquinone biosynthesis methyltransferase5e-28124
NC_008309:555680:576234576234577019786Haemophilus somnus 129PT, complete genomeubiquinone/menaquinone biosynthesis methyltransferase7e-28124
NC_010995:4338860:436051243605124361261750Cellvibrio japonicus Ueda107, complete genomeubiquinone/menaquinone biosynthesis methyltransferase UbiE9e-28124
NC_006526:1202000:120977912097791210507729Zymomonas mobilis subsp. mobilis ZM4, complete genomeubiquinone methyltransferase2e-27122
NC_007712:172000:188006188006188764759Sodalis glossinidius str. 'morsitans', complete genomeubiquinone/menaquinone biosynthesis methyltransferase9e-27120
NC_015731:2400526:240880124088012409535735Nitrosomonas sp. Is79A3 chromosome, complete genomeUbiquinone/menaquinone biosynthesis methyltransferase ubiE4e-26118
NC_004552:235769:244897244897245589693Chlamydophila abortus S26/3, complete genomeubiquinone/menaquinone biosynthesis methyltransferase6e-26117
NC_009663:2023941:204104520410452041782738Sulfurovum sp. NBC37-1, complete genomeubiquinone/menaquinone biosynthesis methyltransferase3e-25115
NC_009511:5362705:537996853799685380750783Sphingomonas wittichii RW1 chromosome, complete genomeubiquinone/menaquinone biosynthesis methyltransferase7e-25114
NC_015499:1466794:147701014770101477699690Thermodesulfobium narugense DSM 14796 chromosome, complete genomeubiquinone/menaquinone biosynthesis methyltransferase4e-24111
NC_002491:585807:595812595812596504693Chlamydophila pneumoniae J138, complete genomeubiquinone/menaquinone biosynthesis methyltransferase5e-24111
NC_002179:237854:244401244401245114714Chlamydophila pneumoniae AR39, complete genomeubiquinone/menaquinone biosynthesis methyltransferase5e-24111
NC_011729:812594:833667833667834377711Cyanothece sp. PCC 7424 chromosome, complete genomeubiquinone/menaquinone biosynthesis methyltransferase2e-23109
NC_002488:1430680:143393814339381434699762Xylella fastidiosa 9a5c, complete genomeubiquinone/menaquinone biosynthesis methyltransferase4e-23108
NC_017187:387735:404172404172404882711Arcobacter butzleri ED-1, complete genomeubiquinone/menaquinone biosynthesis methyltransferase4e-23108
NC_009850:413093:426531426531427241711Arcobacter butzleri RM4018, complete genomebifunctional ubiquinone/menaquinone biosynthesis methlytransferase4e-23108
NC_013722:3022236:304523530452353046056822Xanthomonas albilineans, complete genomeprobable ubiquinone/menaquinone biosynthesis methyltransferase protein7e-22104
NC_005070:1588419:161104316110431611744702Synechococcus sp. WH 8102, complete genomepossible menaquinone biosynthesis methyltransferase4e-21102
NC_002578:828000:855042855042855731690Thermoplasma acidophilum DSM 1728, complete genomeubiquinone/menaquinone methyltransferase related protein2e-21102
NC_007513:1503955:151899715189971519698702Synechococcus sp. CC9902, complete genomeUbiquinone/menaquinone biosynthesis methyltransferase4e-21101
NC_008319:635157:658072658072658773702Synechococcus sp. CC9311, complete genomeubiquinone/menaquinone biosynthesis methyltransferase UbiE1e-20100
NC_006677:1503513:152046715204671521348882Gluconobacter oxydans 621H, complete genomeMethyltransferase1e-1893.6
NC_007948:3502843:350435935043593505129771Polaromonas sp. JS666, complete genomeMethyltransferase type 115e-1478.2
NC_015587:1232642:125726612572661257928663Hydrogenobaculum sp. SHO chromosome, complete genomeMethyltransferase type 112e-1376.3
NC_015557:1232772:125739612573961258058663Hydrogenobaculum sp. 3684 chromosome, complete genomeUbiE/COQ5 methyltransferase2e-1376.3
NC_015573:110108:124628124628125548921Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genometype 11 methyltransferase2e-1376.3
NC_004344:129798:129798129798130253456Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein9e-1373.9
NC_015518:222000:239216239216239947732Acidianus hospitalis W1 chromosome, complete genomeUbiE/COQ5 methyltransferase7e-1271.2
NC_011529:766292:776366776366776980615Thermococcus onnurineus NA1, complete genomeubiquinone/menaquinone biosynthesis methyltransferase; (ubiE)2e-1169.3
NC_014804:1183780:121389612138961214483588Thermococcus barophilus MP chromosome, complete genome2-heptaprenyl-1/4-naphthoquinone methyltransferase3e-1168.9
NC_015387:1002955:101171510117151012341627Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeMethyltransferase type 114e-1168.6
NC_012589:783704:783704783704784402699Sulfolobus islandicus L.S.2.15, complete genomeUbiE/COQ5 methyltransferase2e-1065.9
NC_011894:3029964:305057630505763051385810Methylobacterium nodulans ORS 2060, complete genomeMethyltransferase type 113e-1065.5
NC_015680:755500:767903767903768451549Pyrococcus yayanosii CH1 chromosome, complete genomeubiquinone/menaquinone biosynthesis methyltransferase4e-1065.5
NC_014804:1183780:119857711985771199185609Thermococcus barophilus MP chromosome, complete genomeubiquinone/menaquinone biosynthesis methyltransferase5e-1065.1
NC_012440:1405879:141323514132351413906672Persephonella marina EX-H1, complete genomemethyltransferase, UbiE/COQ5 family7e-1064.7
NC_007355:544796:558905558905559684780Methanosarcina barkeri str. fusaro chromosome 1, complete sequenceubiquinone/menaquinone biosynthesis methyltransferase6e-1064.7
NC_019977:65205:820798207982705627Methanomethylovorans hollandica DSM 15978, complete genomemethylase involved in ubiquinone/menaquinone biosynthesis5e-1064.7
NC_018681:5378197:539746253974625398280819Nocardia brasiliensis ATCC 700358 chromosome, complete genomemethyltransferase type 119e-1063.9
NC_012883:1522920:153812615381261538737612Thermococcus sibiricus MM 739, complete genomeUbiquinone/menaquinone biosynthesis methyltransferase9e-1063.9
NC_009635:518000:530478530478531110633Methanococcus aeolicus Nankai-3 chromosome, complete genomemethyltransferase type 111e-0963.9
NC_013093:3791912:380528438052843806099816Actinosynnema mirum DSM 43827, complete genomeMethyltransferase type 112e-0963.2
NC_015573:2040500:205804620580462058735690Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genometype 11 methyltransferase2e-0963.2
NC_011666:2109274:211062621106262111288663Methylocella silvestris BL2, complete genomePhosphatidylethanolamine N-methyltransferase3e-0962.4
NC_011757:39881:651436514365886744Methylobacterium chloromethanicum CM4, complete genomeMethyltransferase type 113e-0962.4
NC_014002:31293:477234772348499777Methanohalophilus mahii DSM 5219 chromosome, complete genomeMethyltransferase type 114e-0962
NC_019673:359540:367884367884368648765Saccharothrix espanaensis DSM 44229 complete genomeMethyltransferase type 115e-0961.6
NC_015311:1827000:183976618397661840467702Prevotella denticola F0289 chromosome, complete genomemethyltransferase domain-containing protein7e-0961.2
NC_015573:110108:128766128766129527762Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genometype 11 methyltransferase7e-0961.2
NC_013523:2560000:256454825645482565174627Sphaerobacter thermophilus DSM 20745 chromosome 1, complete genomeMethyltransferase type 116e-0961.2
NC_016902:3863932:387866238786623879432771Escherichia coli KO11FL chromosome, complete genometype 11 methyltransferase9e-0960.8
CP002516:3863932:387866238786623879432771Escherichia coli KO11, complete genomeMethyltransferase type 119e-0960.8
NC_013093:3791912:380450238045023805287786Actinosynnema mirum DSM 43827, complete genomeMethyltransferase type 111e-0860.5
NC_021177:2139838:214090821409082141639732Streptomyces fulvissimus DSM 40593, complete genomeMethyltransferase1e-0860.1
NC_013854:1686997:168921016892101689974765Azospirillum sp. B510, complete genomeubiquinone/menaquinone biosynthesis methyltransferase ubi3e-0859.3
NC_003901:860242:880280880280881011732Methanosarcina mazei Go1, complete genomeSAM-dependent methyltransferase2e-0859.3
NC_020389:714178:728673728673729647975Methanosarcina mazei Tuc01, complete genomehypothetical protein2e-0859.3
NC_011831:2728932:273132127313212731935615Chloroflexus aggregans DSM 9485, complete genomeMethyltransferase type 113e-0858.9
NC_015564:2870631:287063128706312871470840Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomemethyltransferase3e-0858.9
NC_021182:4088000:409260340926034093229627Clostridium pasteurianum BC1, complete genomemethylase involved in ubiquinone/menaquinone biosynthesis3e-0858.9
NC_015172:775128:800484800484801110627Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeMethyltransferase type 114e-0858.9
NC_009485:1946000:195068419506841951319636Bradyrhizobium sp. BTAi1 chromosome, complete genomephosphatidyl-N-methylethanolamine N-methyltransferase6e-0858.2
NC_014623:7482229:752914875291487529945798Stigmatella aurantiaca DW4/3-1 chromosome, complete genometype 11 methyltransferase6e-0858.2
NC_010162:7899980:791627079162707916917648Sorangium cellulosum 'So ce 56', complete genomeSAM-dependent methyltransferase6e-0858.2
NC_020829:3434736:343473634347363435548813Pseudomonas denitrificans ATCC 13867, complete genometype 11 methyltransferase6e-0858.2
NC_007484:2392739:241204324120432412972930Nitrosococcus oceani ATCC 19707, complete genomeBiotin biosynthesis protein BioC5e-0858.2
NC_009467:117812:129492129492130319828Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequencemethyltransferase type 115e-0858.2
NC_013422:2004478:201728120172812018081801Halothiobacillus neapolitanus c2, complete genomebiotin biosynthesis protein BioC6e-0857.8
NC_013959:2801557:281600028160002816857858Sideroxydans lithotrophicus ES-1 chromosome, complete genomeMethyltransferase type 111e-0757.4
NC_016590:1183470:118347011834701184294825Burkholderia sp. YI23 chromosome 3, complete sequencemethyltransferase1e-0757.4
NC_005071:288922:314592314592315035444Prochlorococcus marinus str. MIT 9313, complete genomeputative menaquinone biosynthesis methlytransferase (spore ge...1e-0757
NC_016111:1546505:156020715602071561055849Streptomyces cattleya NRRL 8057, complete genomeD-glucose O-methyltransferase2e-0756.6
NC_013743:1045488:106232510623251063146822Haloterrigena turkmenica DSM 5511, complete genomeMethyltransferase type 112e-0756.6
NC_013440:5944935:5954874595487459561211248Haliangium ochraceum DSM 14365, complete genomeMethyltransferase type 112e-0756.6
NC_008789:1669082:167716016771601677939780Halorhodospira halophila SL1, complete genomeMethyltransferase type 112e-0756.6
NC_016109:5290000:530951253095125310330819Kitasatospora setae KM-6054, complete genomehypothetical protein2e-0756.2
NC_003552:4782635:480040848004084801163756Methanosarcina acetivorans C2A, complete genomeubiE/COQ5 methyltransferase2e-0756.2
NC_007355:544796:558137558137558889753Methanosarcina barkeri str. fusaro chromosome 1, complete sequenceubiquinone/menaquinone biosynthesis methyltransferase2e-0756.2
NC_018681:5490963:550531855053185505980663Nocardia brasiliensis ATCC 700358 chromosome, complete genomemethyltransferase type 113e-0755.8
NC_014507:906960:906960906960907724765Methanoplanus petrolearius DSM 11571 chromosome, complete genometype 11 methyltransferase4e-0755.5
NC_013159:2832552:285190228519022852636735Saccharomonospora viridis DSM 43017, complete genomemethylase involved in ubiquinone/menaquinone biosynthesis4e-0755.5
NC_007802:1991211:202540220254022026187786Jannaschia sp. CCS1, complete genomeMethyltransferase type 113e-0755.5
NC_013744:252702:253623253623254447825Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeMethyltransferase type 113e-0755.5
NC_014315:1042556:104451010445101045439930Nitrosococcus watsoni C-113 chromosome, complete genomebiotin biosynthesis protein BioC4e-0755.1
NC_019964:861000:873985873985874761777Halovivax ruber XH-70, complete genomemethylase involved in ubiquinone/menaquinone biosynthesis5e-0755.1
NC_008435:1131242:117494211749421175580639Rhodopseudomonas palustris BisA53, complete genomePhosphatidylethanolamine N-methyltransferase7e-0754.7
NC_014355:3398033:3411960341196034158173858Candidatus Nitrospira defluvii, complete genomeputative methyltransferase and glycosyltransferase7e-0754.7
NC_009523:5475812:549400854940085494673666Roseiflexus sp. RS-1 chromosome, complete genometype 11 methyltransferase7e-0754.3
NC_019968:1235500:126356412635641264277714Prevotella dentalis DSM 3688 chromosome 2, complete sequencemethylase involved in ubiquinone/menaquinone biosynthesis8e-0754.3
NC_018681:5490963:549930654993065499857552Nocardia brasiliensis ATCC 700358 chromosome, complete genomeS-adenosyl-L-methionine-dependent methyltransferase9e-0754.3
NC_016745:1257397:126908712690871269851765Oceanimonas sp. GK1 chromosome, complete genometype 11 methyltransferase1e-0653.9
NC_015573:1979202:199269519926951993348654Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genometype 11 methyltransferase9e-0753.9
NC_013665:1123943:114805111480511148854804Methanocella paludicola SANAE, complete genomeputative methyltransferase1e-0653.5
NC_008699:3516608:353441835344183535050633Nocardioides sp. JS614, complete genomeMethyltransferase type 112e-0653.1
NC_007958:4371125:440850844085084409146639Rhodopseudomonas palustris BisB5, complete genomePhosphatidylethanolamine N-methyltransferase2e-0653.1
NC_015581:1791658:180735418073541808286933Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomebiotin biosynthesis protein BioC2e-0653.1
NC_017955:2494640:249933024993302500184855Modestobacter marinus, complete genometype 11 methyltransferase2e-0652.8
NC_013592:2338403:235722223572222357992771Dickeya dadantii Ech586, complete genomeMethyltransferase type 113e-0652.4
NC_007604:1442500:145991414599141460555642Synechococcus elongatus PCC 7942, complete genomemembrane-associated protein3e-0652.4
NC_013526:530212:541487541487542113627Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeMethyltransferase type 113e-0652.4
NC_015416:525018:530018530018530821804Methanosaeta concilii GP-6 chromosome, complete genome3e-0652.4
NC_018681:5378197:540287354028735403694822Nocardia brasiliensis ATCC 700358 chromosome, complete genometype 11 methyltransferase3e-0652.4
NC_013757:3753241:377601037760103776765756Geodermatophilus obscurus DSM 43160, complete genomeMethyltransferase type 114e-0652
NC_004463:7683426:770223577022357702873639Bradyrhizobium japonicum USDA 110, complete genomeputative phosphatidylethanolamine N-methyltransferase4e-0652
NC_008702:1432952:143661414366141437468855Azoarcus sp. BH72, complete genomeputative methyltransferase4e-0652
NC_017249:3267500:328872832887283289522795Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-0652
NC_015957:2726816:272597127259712726819849Streptomyces violaceusniger Tu 4113 chromosome, complete genometype 11 methyltransferase4e-0652
NC_015564:2870631:290088129008812901675795Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genometype 11 methyltransferase5e-0651.6
NC_014666:13876:138761387614673798Frankia sp. EuI1c chromosome, complete genomeMethyltransferase type 115e-0651.6
NC_002570:2649759:265406626540662654728663Bacillus halodurans C-125, complete genomehypothetical protein7e-0651.2
NC_010681:934374:934374934374935192819Burkholderia phytofirmans PsJN chromosome 1, complete sequenceMethyltransferase type 118e-0651.2
NC_019792:2416000:243785224378522438601750Natronobacterium gregoryi SP2 chromosome, complete genomemethylase8e-0651.2
NC_021150:582011:582726582726583529804Azotobacter vinelandii CA6, complete genomebiotin synthesis protein BioC8e-0650.8
NC_012560:582011:582726582726583529804Azotobacter vinelandii DJ, complete genomebiotin synthesis protein BioC8e-0650.8