Pre_GI: BLASTP Hits

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Query: NC_011147:792489:806466 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 806466, End: 806930, Length: 465

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:792543:806520806520806984465Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-87320
NC_011149:2179592:218967321896732190170498Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein7e-87318
NC_003198:2179688:218976821897682190217450Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-80297
NC_004631:799810:813719813719814168450Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-80297
NC_006155:3805640:381798638179863818486501Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-45181
NC_005810:3917254:394684739468473947347501Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein1e-45181
NC_010634:3720214:373105837310583731567510Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein3e-45180
NC_003143:1059580:107190710719071072287381Yersinia pestis CO92, complete genomehypothetical protein3e-39160
NC_017265:809943:836955836955837344390Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein7e-39159
NC_004088:3689000:370000537000053700394390Yersinia pestis KIM, complete genomehypothetical protein7e-39159