Pre_GI: BLASTP Hits

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Query: NC_011147:4460726:4460726 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 4460726, End: 4461463, Length: 738

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:2862178:286300328630032863740738Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-130462
NC_016810:2871689:289526428952642896067804Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage capsid protein4e-129460
NC_011080:2870428:288343428834342884129696Salmonella enterica subsp. enterica serovar Newport str. SL254,glycoprotein 36e-123439
NC_016857:2871689:289526428952642895959696Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74glycoprotein 31e-120432
NC_006511:4465495:446549544654954466229735Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC4e-107387
NC_009436:3367194:337950033795003380231732Enterobacter sp. 638, complete genomehypothetical protein2e-86318
NC_007613:4217557:422250342225034223237735Shigella boydii Sb227, complete genomehypothetical protein4e-80297
NC_011740:448000:453384453384454184801Escherichia fergusonii ATCC 35469, complete genomeGlycoprotein 3 (Capsid size determination protein)7e-80296
NC_010468:49074:504805048051214735Escherichia coli ATCC 8739, complete genomehypothetical protein1e-79295
NC_010468:1130000:115162311516231152357735Escherichia coli ATCC 8739, complete genomehypothetical protein9e-79293
NC_013361:4959323:496073749607374961471735Escherichia coli O26:H11 str. 11368 chromosome, complete genomecapsid size determining protein1e-78293
NC_010498:4072681:408652440865244087258735Escherichia coli SMS-3-5, complete genomeglycoprotein 3, capsid size determination protein Sid7e-78290
NC_021066:5342127:535991653599165360653738Raoultella ornithinolytica B6, complete genomehypothetical protein1e-77289
NC_016845:575123:588482588482589219738Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein5e-77287
NC_012917:3684840:369080836908083691569762Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein4e-26118
NC_012917:833721:839217839217839978762Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein2e-25115
NC_013508:3593000:361063436106343610996363Edwardsiella tarda EIB202, complete genomehypothetical protein8e-21100
NC_020211:996497:100840610084061009188783Serratia marcescens WW4, complete genomeNAD-dependent aldehyde dehydrogenase8e-1270.9
NC_015061:1251905:126414312641431264892750Rahnella sp. Y9602 chromosome, complete genomehypothetical protein1e-1067
NC_013508:3593000:360828536082853608596312Edwardsiella tarda EIB202, complete genomehypothetical protein1e-1067
NC_016818:1291665:130313713031371303886750Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein2e-1066.2
NC_013508:3188978:324857332485733249376804Edwardsiella tarda EIB202, complete genomeputative phage capsid protein2e-0755.8
NC_014121:677799:690064690064690807744Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative phage capsid protein4e-0755.1
NC_009778:567000:597311597311598021711Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-0755.1