Pre_GI: BLASTP Hits

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Query: NC_011094:4361238:4372595 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 4372595, End: 4373011, Length: 417

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:4431831:4442328444232844436051278Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1cation efflux pump2e-77287
NC_003197:4470683:4481180448118044824571278Salmonella typhimurium LT2, complete genomepredicted cation efflux pump2e-77287
NC_006905:4405301:4415797441579744170741278Salmonella enterica subsp. enterica serovar Choleraesuis strmembrane permease, predicted cation efflux pump2e-77287
NC_006511:4225455:4236100423610042373771278Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative type-I secretion protein2e-77287
NC_011147:4221000:4231787423178742330641278Salmonella enterica subsp. enterica serovar Paratyphi A strtype-I secretion protein2e-77287
NC_011274:4305812:4316309431630943175861278Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type-I secretion protein2e-77287
NC_011294:4327904:4338401433840143396781278Salmonella enterica subsp. enterica serovar Enteritidis strtype-I secretion protein2e-77287
NC_016810:4491975:4502472450247245037491278Salmonella enterica subsp. enterica serovar Typhimurium strputative type-I secretion protein2e-77287
NC_016856:4482845:4494722449472244959991278Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Scation efflux pump2e-77287
NC_016857:4491976:4502473450247345037501278Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74cation efflux pump2e-77287
NC_011149:4390315:4400837440083744020871251Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein2e-77286
NC_011083:4466634:4477158447715844784081251Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein2e-77286
NC_004631:4300457:4310954431095443122311278Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative type-I secretion protein2e-77286
NC_003198:4315807:4326304432630443275811278Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative type-I secretion protein2e-77286
NC_011205:4486142:4496666449666644979161251Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-77286
NC_010102:4396500:4407163440716344084131251Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-77286
NC_011080:4461851:4472375447237544736251251Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein2e-77286
NC_012125:4400636:4411159441115944124091251Salmonella enterica subsp. enterica serovar Paratyphi C straintype-I secretion protein2e-77286
NC_016831:4286000:4296686429668642979361251Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative type-I secretion protein2e-77286
NC_016832:4288980:4299504429950443007541251Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cation efflux pump2e-77286
NC_016860:4575772:4586296458629645875461251Salmonella enterica subsp. enterica serovar Typhimurium strputative type I secretion protein2e-77286
NC_017046:4490500:4501160450116045024101251Salmonella enterica subsp. enterica serovar Typhimurium str. 798type-I secretion protein2e-77286
NC_015761:4098481:4109013410901341102901278Salmonella bongori NCTC 12419, complete genometype-I secretion protein1e-74277
NC_010067:3310336:3345938334593833472151278Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein5e-72268
NC_006350:1909639:1938631193863119400461416Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative toxin-related secretion protein3e-1063.9
NC_007434:2424884:2444512244451224459271416Burkholderia pseudomallei 1710b chromosome I, complete sequenceHlyD family secretion protein3e-1063.9
NC_006350:1938631:1938631193863119400461416Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative toxin-related secretion protein3e-1063.9
NC_009076:2027478:2045412204541220468211410Burkholderia pseudomallei 1106a chromosome I, complete sequenceHlyD family secretion protein7e-1062.4
NC_004347:4302768:4308263430826343095881326Shewanella oneidensis MR-1, complete genomeHlyD family secretion protein3e-0753.9
NC_016616:1861852:1866496186649618679051410Dechlorosoma suillum PS chromosome, complete genomeHlyD family type I secretion membrane fusion protein2e-0651.6
NC_014166:1478469:1508985150898515101511167Arcobacter nitrofigilis DSM 7299 chromosome, complete genomesecretion protein HlyD family protein2e-0651.2
NC_013889:1382705:1401521140152114029451425Thioalkalivibrio sp. K90mix chromosome, complete genometype I secretion membrane fusion protein, HlyD family2e-0650.8
NC_017192:1745114:1759951175995117613301380Arcobacter sp. L, complete genomesecretion protein4e-0650.1
NC_020064:2299950:2305668230566823069961329Serratia marcescens FGI94, complete genometype I secretion membrane fusion protein, HlyD family6e-0649.7