Pre_GI: BLASTP Hits

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Query: NC_011080:4703266:4727854 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4727854, End: 4728765, Length: 912

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011205:4718239:474334147433414744252912Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein6e-159560
NC_010102:4745949:476399447639944764905912Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-159559
NC_012125:4716000:474344747434474744358912Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein6e-158556
NC_006905:4638707:466613246661324667043912Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein7e-158556
NC_011294:4560902:458601445860144586925912Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein7e-156549
NC_011147:4460726:449496244949624495873912Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-155548
NC_004631:4687270:470537547053754706286912Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-153542
NC_015761:4355335:437175543717554372666912Salmonella bongori NCTC 12419, complete genomehypothetical protein7e-130463
NC_011747:115864:119318119318120259942Escherichia coli S88 plasmid pECOS88, complete sequencehypothetical protein2e-1273.2
NC_009837:127000:133063133063134004942Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein2e-1273.2
NC_010334:2615260:263425226342522635220969Shewanella halifaxensis HAW-EB4, complete genomehypothetical protein1e-1067.4