Pre_GI: BLASTP Hits

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Query: NC_011080:4703266:4726894 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4726894, End: 4727502, Length: 609

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:4560902:458505445850544585662609Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein8e-108389
NC_011147:4460726:449397844939784494586609Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-107388
NC_010102:4745949:476188547618854762493609Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-107386
NC_011274:4538722:456287245628724563480609Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein6e-107386
NC_004631:4687270:470440647044064705014609Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-106384
NC_012125:4716000:474248547424854743093609Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-106384
NC_011205:4718239:474237947423794742987609Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-106384
NC_006905:4638707:466517046651704665778609Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein6e-106382
NC_011415:308825:315173315173315781609Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-86318
NC_015761:4355335:436955643695564370164609Salmonella bongori NCTC 12419, complete genomehypothetical protein9e-84309
NC_016832:4425330:443335044333504433892543Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-71268
NC_012125:4536383:454440245444024544944543Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-71268
NC_003198:4453457:446147744614774462019543Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-71268