Pre_GI: BLASTP Hits

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Query: NC_011080:25751:31267 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 31267, End: 32112, Length: 846

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:25893:313623136232207846Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-128459
NC_016832:25807:312783127832123846Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-128458
NC_011147:25836:313073130732152846Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-128458
NC_003198:25807:312783127832123846Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-128458
NC_006511:25796:312673126732112846Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-128458
NC_004631:25807:312783127832123846Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-128458
NC_016810:25803:312743127432119846Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-128457
NC_011294:25569:310393103931884846Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein4e-128457
NC_011274:25692:311623116232007846Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein4e-128457
NC_011205:25805:312753127532120846Salmonella enterica subsp. enterica serovar Dublin str. CT_020218534e-128457
NC_003197:25803:312743127432119846Salmonella typhimurium LT2, complete genomeputative thiol-disulfide isomerase4e-128457
NC_016831:25760:312753127532120846Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein4e-128457
NC_016856:25803:312743127432119846Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative thiol-disulfide isomerase4e-128457
NC_016857:25803:312743127432119846Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative thiol-disulfide isomerase4e-128457
NC_016860:25758:312743127432119846Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-128457
NC_016863:25804:312753127532120846Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative thiol-disulfide isomerase4e-128457
NC_017046:25758:312743127432119846Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein4e-128457
NC_011094:25762:312783127832123846Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-128457
NC_011149:25760:312763127632121846Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-128457
NC_010067:2881448:289534428953442896189846Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-124445
NC_009378:106193:112951112951113742792Yersinia pestis Pestoides F plasmid MT, complete sequencehypothetical protein2e-41169
NC_021066:3703725:371839237183923719183792Raoultella ornithinolytica B6, complete genomehypothetical protein1e-35150
NC_006625:63342:720817208173037957Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequencehypothetical protein1e-25117
NC_013285:1:897089709728759Cronobacter turicensis plasmid pCTU3, complete sequencehypothetical protein2e-25116
NC_014562:1402863:140751014075101407938429Pantoea vagans C9-1 chromosome, complete genomehypothetical protein1e-23110
NC_014923:5721686:572571057257105726384675Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeDSBA oxidoreductase4e-1168.6
NC_019973:5650646:565467056546705655344675Mesorhizobium australicum WSM2073, complete genomeprotein-disulfide isomerase4e-1168.6
NC_015675:6276357:628038162803816281055675Mesorhizobium opportunistum WSM2075 chromosome, complete genomeDSBA oxidoreductase4e-1168.6
NC_009007:57804:727517275173572822Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequenceDSBA oxidoreductase5e-0962
NC_009832:3703202:370520637052063705922717Serratia proteamaculans 568, complete genomeDSBA oxidoreductase3e-0859.3
NC_007712:1262593:128735212873521288077726Sodalis glossinidius str. 'morsitans', complete genomesuppressor for copper-sensitivity C2e-0756.2
NC_017082:6687020:668702066870206687652633Bradyrhizobium sp. S23321, complete genomehypothetical protein5e-0755.1