Pre_GI: BLASTP Hits

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Query: NC_010658:1090104:1103246 Shigella boydii CDC 3083-94, complete genome

Start: 1103246, End: 1104463, Length: 1218

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013716:2255102:2267984226798422691951212Citrobacter rodentium ICC168, complete genomeputative O-antigen transporter9e-53207
NC_007606:1999870:2010259201025920114491191Shigella dysenteriae Sd197, complete genomeputative O-antigen transporter7e-46184
NC_015185:1352171:1353568135356813548481281Desulfurobacterium thermolithotrophum DSM 11699 chromosome,polysaccharide biosynthesis protein7e-40165
NC_011415:2346474:2365729236572923669791251Escherichia coli SE11 chromosome, complete genomehypothetical protein9e-38157
NC_012759:1983975:1998844199884420000911248Escherichia coli BW2952 chromosome, complete genomeputative polisoprenol-linked O-antigen transporter6e-36152
NC_010473:2183567:2197369219736921986161248Escherichia coli str. K-12 substr. DH10B, complete genomepredicted polisoprenol-linked O-antigen transporter6e-36152
NC_000913:2092559:2106361210636121076081248Escherichia coli K12, complete genomepredicted polisoprenol-linked O-antigen transporter6e-36152
AC_000091:2096672:2110474211047421117211248Escherichia coli W3110 DNA, complete genomepredicted polisoprenol-linked O-antigen transporter6e-36152
NC_012483:30784:6336163361647131353Acidobacterium capsulatum ATCC 51196, complete genomeputative O-antigen transporter2e-32140
NC_006510:3321426:3341644334164433429331290Geobacillus kaustophilus HTA426, complete genomeO-antigen transporter2e-32140
NC_006510:3321426:3363539336353933647981260Geobacillus kaustophilus HTA426, complete genomeO-antigen transporter1e-31137
NC_010681:934374:9486099486099498681260Burkholderia phytofirmans PsJN chromosome 1, complete sequencepolysaccharide biosynthesis protein3e-29129
NC_014119:977136:9835949835949848591266Burkholderia sp. CCGE1002 chromosome chromosome 3, completepolysaccharide biosynthesis protein4e-28125
NC_015224:1391088:1399234139923414004901257Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,translocase5e-27122
NC_009337:1200722:1214355121435512155691215Chlorobium phaeovibrioides DSM 265 chromosome, complete genomepolysaccharide biosynthesis protein9e-27121
NC_006582:3827844:3842212384221238434891278Bacillus clausii KSM-K16, complete genomeO-antigen transporter5e-26119
NC_014935:1389000:1409861140986114111321272Nitratifractor saLSUginis DSM 16511 chromosome, complete genomepolysaccharide biosynthesis protein4e-25115
NC_010831:2078329:2094543209454320958171275Chlorobium phaeobacteroides BS1, complete genomepolysaccharide biosynthesis protein1e-24114
NC_014408:682689:7036937036937049521260Methanothermobacter marburgensis str. Marburg chromosome, completepolysaccharide biosynthesis protein1e-24114
NC_011001:1462532:1480615148061514818681254Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative exopolysaccharide transporter4e-24112
NC_009655:866281:8748968748968761521257Actinobacillus succinogenes 130Z chromosome, complete genomepolysaccharide biosynthesis protein1e-23110
NC_013508:1289159:1296989129698912981041116Edwardsiella tarda EIB202, complete genomeO-unit translocase (flippase)5e-23108
NC_017272:607900:6201606201606214491290Thermus thermophilus SG0.5JP17-16 chromosome, complete genomepolysaccharide biosynthesis protein1e-22107
NC_006300:600516:6091126091126104041293Mannheimia succiniciproducens MBEL55E, complete genomeRfbX protein3e-22106
NC_011916:467106:4804394804394817101272Caulobacter crescentus NA1000 chromosome, complete genomeoligosaccharide translocase/flippase6e-22105
NC_011026:2450325:2463753246375324650031251Chloroherpeton thalassium ATCC 35110, complete genomepolysaccharide biosynthesis protein1e-21104
NC_015966:2256943:2273729227372922749701242Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomepolysaccharide biosynthesis protein2e-21103
NC_008563:2182270:2195479219547921967051227Escherichia coli APEC O1, complete genomeputative O-antigen transporter7e-21102
NC_014758:1207894:1237144123714412384271284Calditerrivibrio nitroreducens DSM 19672 chromosome, completepolysaccharide biosynthesis protein9e-21101
NC_014974:246404:2509712509712522931323Thermus scotoductus SA-01 chromosome, complete genomeO-antigen transporter2e-20100
NC_013894:117644:1321121321121333981287Thermocrinis albus DSM 14484 chromosome, complete genomepolysaccharide biosynthesis protein8e-2098.6
NC_013946:2050871:2064784206478420660581275Meiothermus ruber DSM 1279 chromosome, complete genomepolysaccharide biosynthesis protein1e-1997.8
NC_006461:605249:6171536171536184181266Thermus thermophilus HB8, complete genomeputative O-antigen transporter4e-1996.3
NC_007511:2072838:2072838207283820740941257Burkholderia sp. 383 chromosome 2, complete sequencePolysaccharide biosynthesis protein9e-1995.1
NC_012779:1286500:1294276129427612955231248Edwardsiella ictaluri 93-146, complete genomeO antigen transporter4e-1789.7
NC_020260:1184174:1194615119461511958711257Cronobacter sakazakii Sp291, complete genomeO-antigen, teichoic acid lipoteichoic acids export membrane protein3e-1583.2
NC_014212:2776457:2790238279023827914761239Meiothermus silvanus DSM 9946 chromosome, complete genomepolysaccharide biosynthesis protein1e-1481.3
NC_013730:7743954:7755334775533477566291296Spirosoma linguale DSM 74, complete genomepolysaccharide biosynthesis protein3e-1480.1
NC_009253:3272000:3301258330125833026731416Desulfotomaculum reducens MI-1 chromosome, complete genomepolysaccharide biosynthesis protein1e-1377.8
NC_014334:1954333:1964711196471119661411431Lactobacillus casei str. Zhang chromosome, complete genomepolysaccharide Transporter, PST family1e-1274.3
NC_015144:997587:1006361100636110075991239Weeksella virosa DSM 16922 chromosome, complete genomepolysaccharide biosynthesis protein3e-1273.2
NC_008570:3220539:3241655324165532428691215Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomepolysaccharide biosynthesis protein4e-1272.8
NC_005966:69689:7148971489727391251Acinetobacter sp. ADP1, complete genomeputative polysaccharide transport protein1e-1068.2
NC_020207:843822:8561968561968576261431Enterococcus faecium NRRL B-2354, complete genomeMembrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acid1e-1067.8
NC_020054:1002906:1009197100919710104951299Fibrella aestuarina BUZ 2 drat genomeputative O-antigen transporter3e-1066.6
NC_014554:1019730:1036622103662210380371416Lactobacillus plantarum subsp. plantarum ST-III chromosome,polysaccharide biosynthesis protein5e-1065.9
NC_008532:973510:9803289803289817431416Streptococcus thermophilus LMD-9, complete genomePolysaccharide Transporter, PST family6e-1065.9
NC_004757:2451919:246404024640402464840801Nitrosomonas europaea ATCC 19718, complete genome5e-0962.4
NC_004431:2383901:2399075239907524003311257Escherichia coli CFT073, complete genomehypothetical protein2e-0860.8
NC_008253:2134110:2149283214928321505211239Escherichia coli 536, complete genomeputative O antigen flippase2e-0860.5
NC_020064:1547524:1581589158158915828121224Serratia marcescens FGI94, complete genomemembrane protein involved in the export of O-antigen and teichoic acid5e-0859.3
NC_013530:3204825:3231873323187332333301458Xylanimonas cellulosilytica DSM 15894, complete genomepolysaccharide biosynthesis protein1e-0757.8
NC_010999:2155714:2163855216385521652911437Lactobacillus casei, complete genomeRepeat unit transporter1e-0757.8
NC_013410:1203937:1215569121556912170261458Fibrobacter succinogenes subsp. succinogenes S85 chromosome,polysaccharide biosynthesis protein2e-0757.4
NC_016902:1846492:1855083185508318563211239Escherichia coli KO11FL chromosome, complete genomepolysaccharide biosynthesis protein4e-0756.2
CP002185:2233732:2249534224953422507721239Escherichia coli W, complete genomeputative O antigen flippase4e-0756.2
CP002516:1846492:1855083185508318563211239Escherichia coli KO11, complete genomepolysaccharide biosynthesis protein4e-0756.2
NC_015737:2691246:2755755275575527572211467Clostridium sp. SY8519, complete genomehypothetical protein5e-0755.8
NC_013204:2826500:2838118283811828394131296Eggerthella lenta DSM 2243, complete genomepolysaccharide biosynthesis protein1e-0655.1
NC_009615:322107:3358983358983373011404Parabacteroides distasonis ATCC 8503 chromosome, complete genomeLPS biosynthesis flippase1e-0654.7
NC_015975:99500:1164301164301179111482Lactobacillus ruminis ATCC 27782 chromosome, complete genomeExoploysaccharide biosynthesis flippase enzyme2e-0654.3
NC_016077:998741:1049625104962510510701446Acidaminococcus intestini RyC-MR95 chromosome, complete genomepolysaccharide transporter2e-0654.3
NC_009615:1627961:1641634164163416428841251Parabacteroides distasonis ATCC 8503 chromosome, complete genomeO-antigen transporter2e-0653.9
NC_004567:1066710:1076392107639210778191428Lactobacillus plantarum WCFS1, complete genomerepeat unit transporter2e-0653.5
NC_012914:469117:4852194852194866761458Paenibacillus sp. JDR-2, complete genomepolysaccharide biosynthesis protein3e-0653.1
NC_013198:2088780:2101894210189421033151422Lactobacillus rhamnosus GG, complete genomepolysaccharide transporter, PST family protein / flippase (wzx)9e-0652