Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:1203937 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
120393712062312295signal peptide peptidase SppA 36K typeQuickGO ontologyBLASTP
120630412084002097capsular polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
120839712094191023NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
120942212101447234-diphosphocytidyl-2C-methyl-D-erythritol synthaseQuickGO ontologyBLASTP
12101481211041894glycerophosphoryl diester phosphodiesteraseQuickGO ontologyBLASTP
121104212124121371hypothetical proteinBLASTP
12124091213227819glycosyltransferase family proteinQuickGO ontologyBLASTP
12132271214132906family 2 glycosyl transferaseQuickGO ontologyBLASTP
121413512154811347hypothetical proteinBLASTP
121556912170261458polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
12170441217868825LicD family proteinQuickGO ontologyBLASTP
121791312190941182hypothetical proteinBLASTP
12190981219841744hypothetical protein
12198381220836999NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
12208501221578729metallophosphoesteraseQuickGO ontologyBLASTP
122158112227081128phosphonopyruvate decarboxylaseQuickGO ontologyBLASTP
122271112240211311phosphoenolpyruvate phosphomutaseQuickGO ontologyBLASTP
12240591224832774hypothetical proteinBLASTP
12248321225806975NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
122581012269341125UDP-galactopyranose mutaseQuickGO ontologyBLASTP
122693812283081371nucleotide sugar dehydrogenaseQuickGO ontologyBLASTP