Pre_GI: BLASTP Hits

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Query: NC_010322:583842:589425 Pseudomonas putida GB-1 chromosome, complete genome

Start: 589425, End: 590711, Length: 1287

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015726:406450:4141604141604153561197Cupriavidus necator N-1 chromosome 1, complete sequencetyrosine-based site-specific recombinase CMGI-71e-104380
NC_015458:2998000:3009145300914530104251281Pusillimonas sp. T7-7 chromosome, complete genomeintegrase family protein2e-87323
NC_020829:636773:6418616418616431711311Pseudomonas denitrificans ATCC 13867, complete genomeintegrase8e-85314
NC_009524:1369395:1381372138137213825621191Psychrobacter sp. PRwf-1 chromosome, complete genomephage integrase family protein2e-59229
NC_015563:2018038:2032460203246020336111152Delftia sp. Cs1-4 chromosome, complete genomeintegrase family protein1e-58227
NC_016816:1545354:1558942155894215601501209Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family1e-51204
CU928160:4570498:4581350458135045825521203Escherichia coli IAI1 chromosome, complete genomeputative integrase4e-51202
NC_011741:4570498:4581350458135045825521203Escherichia coli IAI1 chromosome, complete genomeputative integrase4e-51202
NC_012917:1840172:1850685185068518518751191Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein4e-51202
NC_004547:1174650:1187197118719711884081212Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase3e-51202
NC_009436:3117661:3144337314433731455391203Enterobacter sp. 638, complete genomephage integrase family protein3e-51202
NC_008800:1090000:1099313109931311005181206Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative integrase/recombinase1e-50201
NC_014640:6815264:6840529684052968417851257Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein5e-48192
NC_013941:3300000:3334944333494433361491206Escherichia coli O55:H7 str. CB9615 chromosome, complete genomesite specific recombinase9e-46184
NC_011353:3573641:3601448360144836026531206Escherichia coli O157:H7 str. EC4115 chromosome, complete genome9e-46184
NC_002695:3468873:3497212349721234984171206Escherichia coli O157:H7 str. Sakai, complete genomeputative site specific recombinase9e-46184
NC_013008:3525428:3556173355617335573781206Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein9e-46184
NC_013421:1819036:1849485184948518506901206Pectobacterium wasabiae WPP163, complete genomeintegrase family protein1e-45184
NC_011283:4438500:4462553446255344637581206Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase2e-45183
NC_010067:191190:2005492005492016041056Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-45181
NC_002655:3538656:3564664356466435657071044Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-39163
NC_014562:2563466:259475725947572595506750Pantoea vagans C9-1 chromosome, complete genomeTyrosine recombinase xerD5e-36152
NC_010571:2943369:2950545295054529517831239Opitutus terrae PB90-1, complete genomeintegrase family protein1e-33144
NC_016514:3573400:3598096359809635993641269Enterobacter cloacae EcWSU1 chromosome, complete genometyrosine recombinase XerD2e-33144
NC_012880:3421500:3438268343826834394911224Dickeya dadantii Ech703, complete genomeintegrase family protein1e-32140
NC_003919:3396136:3409969340996934112881320Xanthomonas axonopodis pv. citri str. 306, complete genomeintegrase/recombinase4e-32139
NC_009792:3665369:3688867368886736899851119Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein5e-31135
NC_008577:2604281:2607529260752926088511323Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein3e-29130
NC_014752:834616:874228874228875190963Neisseria lactamica ST-640, complete genomehypothetical protein1e-28127
NC_010506:4873487:4880722488072248820231302Shewanella woodyi ATCC 51908, complete genomephage integrase family protein5e-28125
NC_014311:3076519:3117128311712831183451218Ralstonia solanacearum PSI07 chromosome, complete genomephage integrase1e-27124
NC_004578:5192110:5195601519560151968661266Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family3e-27123
NC_020829:940692:9915479915479928121266Pseudomonas denitrificans ATCC 13867, complete genomephage integrase family site specific recombinase8e-25115
NC_020209:1949500:1955255195525519565081254Pseudomonas poae RE*1-1-14, complete genomesite-specific recombinase, phage integrase family protein1e-23111
NC_005773:4899252:4901655490165549029171263Pseudomonas syringae pv. phaseolicola 1448A, complete genomesite-specific recombinase, phage integrase family1e-23110
NC_008740:2563278:2581229258122925825151287Marinobacter aquaeolei VT8, complete genomephage integrase family protein2e-23110
NC_005773:4282840:429044642904464291432987Pseudomonas syringae pv. phaseolicola 1448A, complete genomePhage integrase family domain protein4e-23109
NC_014366:478000:4841234841234853041182Gamma proteobacterium HdN1, complete genomephage integrase2e-20100
NC_004603:3080614:3098708309870830999791272Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein4e-1996.3
NC_006350:595893:6374336374336386111179Burkholderia pseudomallei K96243 chromosome 1, complete sequencephage integrase family protein9e-1788.2
NC_011663:674069:6764326764326777541323Shewanella baltica OS223 chromosome, complete genomeintegrase family protein4e-1582.8
NC_009665:639914:6422716422716435931323Shewanella baltica OS185 chromosome, complete genomephage integrase family protein4e-1582.8
NC_004129:3452885:3461943346194334631661224Pseudomonas fluorescens Pf-5, complete genomesite-specific recombinase, phage integrase family5e-1479.3
NC_007969:1664500:1677149167714916785371389Psychrobacter cryohalolentis K5, complete genomephage integrase1e-1378.2
NC_005773:3220500:3232787323278732339951209Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH05, site-specific recombinase, phage integrase family8e-1375.1
NC_007510:1959883:2015945201594520170631119Burkholderia sp. 383 chromosome 1, complete sequencePhage integrase6e-1168.9
NC_017986:2548720:2556613255661325578421230Pseudomonas putida ND6 chromosome, complete genomephage integrase family protein2e-0964.3
NC_012988:1130227:113954811395481139838291Methylobacterium extorquens DM4, complete genomehypothetical protein1e-0861.6
NC_011757:1091486:109922110992211099511291Methylobacterium chloromethanicum CM4, complete genomeintegrase family protein1e-0861.6
NC_010334:2615260:2654833265483326561851353Shewanella halifaxensis HAW-EB4, complete genomephage integrase3e-0860.5