Pre_GI: BLASTP Hits

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Query: NC_009727:766000:767345 Coxiella burnetii Dugway 7E9-12, complete genome

Start: 767345, End: 767575, Length: 231

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Coxiella burnetii Dugway 5J108-111 was isolated from rodents in Utah, USA. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007520:2391675:240666924066692406884216Thiomicrospira crunogena XCL-2, complete genometranscriptional regulator, XRE family2e-23107
NC_015589:2049328:207201020720102072231222Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehelix-turn-helix domain-containing protein4e-21100
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome4e-2199.8
NC_012658:545840:561215561215561454240Clostridium botulinum Ba4 str. 657 chromosome, complete genomehypothetical protein6e-2199.4
NC_017297:564727:568638568638568877240Clostridium botulinum F str. 230613 chromosome, complete genomehypothetical protein6e-2199.4
NC_009699:564455:568366568366568605240Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein6e-2199.4
NC_010516:583870:585072585072585311240Clostridium botulinum B1 str. Okra, complete genomehypothetical protein7e-2199.4
NC_017195:2027430:202917720291772029416240Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscription regulator, Cro/CI family -related protein7e-2199
NC_014479:2038348:203884120388412039065225Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative transcriptional regualtor7e-2199
NC_016047:2150000:215050421505042150728225Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetranscription regulator, Cro/CI family -related protein7e-2199
UCMB5137:1676568:168645016864501686671222Bacillus atrophaeus UCMB-5137YozG1e-2098.6
NC_015687:2632557:266228326622832662498216Clostridium acetobutylicum DSM 1731 chromosome, complete genomeCRO family transcriptional regulator1e-2098.2
NC_011830:4473583:448779344877934488002210Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, XRE family2e-2097.4
NC_007907:3472494:347362334736233473832210Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-2097.4
NC_006322:1536426:154601615460161546237222Bacillus licheniformis ATCC 14580, complete genomeYozG2e-2097.4
NC_006270:1535770:154515615451561545377222Bacillus licheniformis ATCC 14580, complete genomeprobable transcriptional regulator YozG2e-2097.4
NC_004193:375416:444197444197444412216Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator5e-2096.3
NC_016616:2426893:242720624272062427433228Dechlorosoma suillum PS chromosome, complete genomeputative transcriptional regulator2e-1994.4
NC_011837:2567691:257378525737852574006222Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-1994.4
NC_008027:5533311:553962355396235539829207Pseudomonas entomophila L48, complete genometranscriptional regulator, Cro/CI family1e-1891.7
NC_015566:2039431:205935920593592059574216Serratia sp. AS12 chromosome, complete genomeXRE family transcriptional regulator2e-1890.9
NC_021184:549940:568554568554568781228Desulfotomaculum gibsoniae DSM 7213, complete genomeputative transcriptional regulator4e-1889.7
NC_021177:2309615:231604023160402316261222Streptomyces fulvissimus DSM 40593, complete genomeTranscriptional regulator, XRE family1e-1685.1
NC_016582:1751988:175945517594551759676222Streptomyces bingchenggensis BCW-1 chromosome, complete genometranscriptional regulator3e-1683.6
NC_011837:56000:732137321373431219Clostridium kluyveri NBRC 12016, complete genomehypothetical protein3e-1683.6
NC_009706:56000:732137321373431219Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator3e-1683.6
NC_013166:82986:963109631096522213Kangiella koreensis DSM 16069, complete genometranscriptional regulator, XRE family4e-1683.6
NC_016011:1419394:142126214212621421468207Listeria ivanovii subsp. ivanovii PAM 55, complete genomehypothetical protein4e-1476.6
NC_015953:1983821:198798419879841988217234Streptomyces sp. SirexAA-E chromosome, complete genomeXRE family transcriptional regulator5e-1166.6
NC_015952:171707:160116011912312Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02, completeXRE family transcriptional regulator8e-1062.4