Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4492004 Kineococcus radiotolerans SRS30216, complete genome

Start: 4492004, End: 4493179, Length: 1176

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013729:4835452:4840812484081248419781167Kribbella flavida DSM 17836, complete genomehistidine kinase5e-1789
NC_003888:4031299:4032042403204240333671326Streptomyces coelicolor A3(2), complete genometwo-component system sensor kinase2e-1273.6
NC_015953:4746983:4769152476915247703781227Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase3e-1273.6
NC_013235:593289:6067186067186078661149Nakamurella multipartita DSM 44233, complete genomehistidine kinase1e-1171.2
NC_010162:7620000:7628585762858576297421158Sorangium cellulosum 'So ce 56', complete genomeputative two-component system sensor kinase5e-1169.3
NC_013595:606096:6196566196566207741119Streptosporangium roseum DSM 43021, complete genomeputative two-component system sensor kinase5e-1169.3
NC_013739:717352:7210357210357221741140Conexibacter woesei DSM 14684, complete genomeintegral membrane sensor signal transduction histidine kinase1e-1067.8
NC_015957:6859259:6869496686949668707371242Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative signal transduction histidine kinase2e-1067.4
NC_009380:4729340:4748874474887447500971224Salinispora tropica CNB-440 chromosome, complete genomehistidine kinase, dimerisation and phosphoacceptor region3e-1066.6
NC_003888:4523500:4536527453652745378971371Streptomyces coelicolor A3(2), complete genometwo-component sensor kinase7e-1065.5
NC_014550:1581812:1616675161667516179071233Arthrobacter arilaitensis Re117, complete genomeputative signal transduction histidine kinase2e-0964.3
NC_011886:4336417:4361861436186143632371377Arthrobacter chlorophenolicus A6, complete genomehistidine kinase2e-0963.5
NC_016111:2257166:2259667225966722609771311Streptomyces cattleya NRRL 8057, complete genometwo-component system sensor kinase3e-0963.2
NC_013595:1851226:1862814186281418639681155Streptosporangium roseum DSM 43021, complete genomeHistidine kinase8e-0962
NC_018750:5399316:5414659541465954158551197Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system sensor kinase2e-0860.8
NC_010407:2406113:2421488242148824229241437Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative two-component system sensor kinase2e-0860.8
NC_010572:4585500:4598066459806645993851320Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative two-component system sensor kinase1e-0860.8
NC_014391:3445672:3461080346108034622341155Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehistidine kinase dimerization and phosphoacceptor region3e-0860.1
NC_013595:3541012:3541674354167435427921119Streptosporangium roseum DSM 43021, complete genomeputative two-component system sensor kinase3e-0859.7
NC_015953:2059083:2077758207775820791791422Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase4e-0859.3
NC_016582:6811273:6826277682627768277011425Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative two-component system sensor kinase6e-0858.9
NC_016943:1314500:1329748132974813308811134Blastococcus saxobsidens DD2, complete genomeTwo component signal transduction histidine kinase8e-0858.5
NC_016582:6811273:6815992681599268171731182Streptomyces bingchenggensis BCW-1 chromosome, complete genomehistidine kinase1e-0757.8
NC_013169:2423863:2453428245342824546421215Kytococcus sedentarius DSM 20547, complete genomesignal transduction histidine kinase5e-0755.8
NC_015957:8569721:8590806859080685921791374Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative signal transduction histidine kinase1e-0654.7
NC_018868:1271742:1274986127498612762121227Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehistidine kinase1e-0654.3
NC_021177:2185898:2204422220442222057951374Streptomyces fulvissimus DSM 40593, complete genomeIntegral membrane sensor signal transduction histidine kinase2e-0653.5
NC_008699:1067855:1070611107061110717891179Nocardioides sp. JS614, complete genomehistidine kinase, dimerisation and phosphoacceptor region2e-0653.5
NC_009664:4423829:4461207446120744623971191Kineococcus radiotolerans SRS30216, complete genomeintegral membrane sensor signal transduction histidine kinase6e-0652.4
NC_011593:1830500:1846652184665218490302379Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,integral membrane sensor signal transduction histidine kinase7e-0652
NC_017219:1830353:1846433184643318488202388Bifidobacterium longum subsp. infantis ATCC 15697, complete genometwo-component sensor kinase7e-0652