Pre_GI: BLASTP Hits

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Query: NC_009664:1569335:1571632 Kineococcus radiotolerans SRS30216, complete genome

Start: 1571632, End: 1572390, Length: 759

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014165:597000:645093645093645977885Thermobispora bispora DSM 43833 chromosome, complete genometRNA pseudouridine synthase A5e-46184
NC_015957:690817:705828705828706694867Streptomyces violaceusniger Tu 4113 chromosome, complete genometRNA pseudouridine synthase A6e-44177
NC_003888:5114147:514419051441905145044855Streptomyces coelicolor A3(2), complete genometRNA pseudouridine synthase A1e-43176
NC_013929:4136742:414261441426144143477864Streptomyces scabiei 87.22 chromosome, complete genometRNA-pseudouridine synthase2e-43176
NC_010572:3314500:331726233172623318116855Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative pseudouridine synthase3e-43175
NC_018750:4728870:475122747512274752084858Streptomyces venezuelae ATCC 10712, complete genometRNA pseudouridine synthase A1e-42173
NC_015953:4385419:442170544217054422559855Streptomyces sp. SirexAA-E chromosome, complete genometRNA pseudouridine synthase A1e-42172
NC_016114:2960989:296376029637602964614855Streptomyces flavogriseus ATCC 33331 chromosome, complete genometRNA pseudouridine synthase A2e-42172
NC_013174:650986:655043655043655975933Jonesia denitrificans DSM 20603, complete genometRNA pseudouridine synthase A7e-42171
NC_016109:3525588:353227535322753533183909Kitasatospora setae KM-6054, complete genomeputative tRNA pseudouridine synthase A1e-41169
NC_014666:7641060:764603376460337646926894Frankia sp. EuI1c chromosome, complete genometRNA pseudouridine synthase A7e-41167
NC_003155:5987000:600370760037076004564858Streptomyces avermitilis MA-4680, complete genometRNA pseudouridine synthase A1e-40166
NC_013093:7722436:772829177282917729235945Actinosynnema mirum DSM 43827, complete genometRNA-pseudouridine synthase I2e-39162
NC_008541:3282415:330682233068223307664843Arthrobacter sp. FB24 chromosome 1, complete sequencetRNA pseudouridine synthase A1e-38159
NC_011886:2950411:298348929834892984382894Arthrobacter chlorophenolicus A6, complete genometRNA pseudouridine synthase A7e-38157
NC_019673:8734993:873611287361128736903792Saccharothrix espanaensis DSM 44229 complete genometRNA pseudouridine synthase A1e-37156
NC_013159:403918:415464415464416366903Saccharomonospora viridis DSM 43017, complete genomepseudouridylate synthase I7e-35147
NC_017955:4888990:489011048901104890955846Modestobacter marinus, complete genometRNA pseudouridine synthase A2e-33142
NC_014218:1485568:148679114867911487672882Arcanobacterium haemolyticum DSM 20595 chromosome, complete genometRNA pseudouridine synthase A9e-33140
NC_012803:1839809:184106018410601841953894Micrococcus luteus NCTC 2665, complete genomepseudouridylate synthase I1e-31137
NC_007164:2046937:204808220480822049068987Corynebacterium jeikeium K411, complete genometRNA pseudouridine synthase A4e-31135
NC_016947:4500329:452153645215364522291756Mycobacterium intracellulare MOTT-02 chromosome, complete genometRNA pseudouridine synthase A4e-29128
NC_013721:276717:299782299782300699918Gardnerella vaginalis 409-05, complete genometRNA pseudouridine synthase A6e-28124
NC_014644:1532500:155738215573821558314933Gardnerella vaginalis ATCC 14019 chromosome, complete genometRNA-pseudouridine synthase I4e-27121
NC_010617:665830:693982693982694977996Kocuria rhizophila DC2201, complete genometRNA pseudouridine synthase TruA3e-23108
NC_020134:301500:319351319351320151801Clostridium stercorarium subsp. stercorarium DSM 8532, completetRNA pseudouridine synthase A5e-1581.6
NC_014377:112992:145176145176145907732Thermosediminibacter oceani DSM 16646 chromosome, complete genometRNA pseudouridine synthase A1e-1377
NC_014964:388458:431878431878432612735Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completetRNA pseudouridine synthase A2e-1375.9
NC_014538:1975385:199145019914501992184735Thermoanaerobacter sp. X513 chromosome, complete genometRNA pseudouridine synthase A2e-1375.9
NC_010320:918532:922400922400923134735Thermoanaerobacter sp. X514 chromosome, complete genometRNA pseudouridine synthase A2e-1375.9
NC_010321:429720:436462436462437196735Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completetRNA pseudouridine synthase A2e-1375.9
NC_015224:3225000:324971332497133250555843Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,tRNA pseudouridine synthase A4e-1375.5
NC_014209:1910109:192607119260711926793723Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,tRNA pseudouridine synthase A4e-1375.5
NC_013921:1977444:199340019934001994122723Thermoanaerobacter italicus Ab9 chromosome, complete genometRNA pseudouridine synthase A5e-1375.1
NC_015391:2523451:253037425303742531213840Carnobacterium sp. 17-4 chromosome, complete genometRNA pseudouridine synthase A1e-1273.6
NC_015958:2251619:227657922765792277313735Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genometRNA pseudouridine synthase A3e-1272
NC_015519:197836:231284231284232015732Tepidanaerobacter sp. Re1 chromosome, complete genometRNA pseudouridine synthase A4e-1168.6
NC_009718:731670:751849751849752589741Fervidobacterium nodosum Rt17-B1, complete genometRNA pseudouridine synthase A5e-1168.2
NC_014011:655266:682909682909683724816Aminobacterium colombiense DSM 12261 chromosome, complete genometRNA pseudouridine synthase A5e-1168.2
NC_016629:1175828:117996611799661180766801Desulfovibrio africanus str. Walvis Bay chromosome, completetRNA pseudouridine synthase A1e-1067.4
NC_009654:2309365:231246123124612313285825Marinomonas sp. MWYL1, complete genometRNA pseudouridine synthase A1e-1067
NC_017511:1936331:195904219590421959839798Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genometRNA pseudouridine synthase A1e-1066.6
NC_011035:2027916:205091420509142051711798Neisseria gonorrhoeae NCCP11945 chromosome, complete genometRNA pseudouridine synthase A1e-1066.6
NC_009484:464342:466430466430467197768Acidiphilium cryptum JF-5 chromosome, complete genometRNA pseudouridine synthase A5e-1064.7
NC_015186:573289:575377575377576144768Acidiphilium multivorum AIU301, complete genometRNA pseudouridine synthase A5e-1064.7
NC_007929:1463295:147889014788901479660771Lactobacillus salivarius subsp. salivarius UCC118, complete genometRNA pseudouridine synthase A1e-0963.9
NC_004193:119737:158840158840159601762Oceanobacillus iheyensis HTE831, complete genometRNA pseudouridine synthase A9e-1063.9
NC_016938:136331:156355156355157128774Melissococcus plutonius DAT561 chromosome 1, complete genometRNA pseudouridine synthase A2e-0963.2
NC_015732:529201:540946540946541746801Spirochaeta caldaria DSM 7334 chromosome, complete genometRNA pseudouridine synthase A3e-0962.4
NC_008817:1476473:151538915153891516195807Prochlorococcus marinus str. MIT 9515, complete genometRNA pseudouridine synthase A6e-0961.2
NC_008609:3732192:373272337327233733457735Pelobacter propionicus DSM 2379, complete genometRNA pseudouridine synthase A6e-0961.2
NC_002946:1786000:178738417873841788181798Neisseria gonorrhoeae FA 1090, complete genomeTruA7e-0961.2
NC_009255:1250939:129874612987461299558813Burkholderia vietnamiensis G4 chromosome 2, complete sequencetRNA pseudouridine synthase A8e-0960.8
NC_017208:108134:147166147166147924759Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetRNA pseudouridine synthase A9e-0960.8
NC_020054:4625895:462916846291684629929762Fibrella aestuarina BUZ 2 drat genometRNA pseudouridine synthase A3e-0858.9
NC_014829:133305:174225174225175007783Bacillus cellulosilyticus DSM 2522 chromosome, complete genometRNA pseudouridine synthase A5e-0858.2
NC_013161:212941:217687217687218568882Cyanothece sp. PCC 8802, complete genometRNA pseudouridine synthase A1e-0757.4
NC_011726:213956:218702218702219583882Cyanothece sp. PCC 8801, complete genometRNA pseudouridine synthase A1e-0757.4
NC_006448:121435:126700126700127446747Streptococcus thermophilus LMG 18311, complete genometRNA pseudouridine synthase A1e-0757.4
NC_006449:121462:126727126727127473747Streptococcus thermophilus CNRZ1066, complete genometRNA pseudouridine synthase A1e-0757.4
NC_014220:2239594:224239522423952243129735Syntrophothermus lipocalidus DSM 12680 chromosome, complete genometRNA pseudouridine synthase A1e-0757
NC_010546:4144449:416396041639604164820861Cyanothece sp. ATCC 51142 chromosome circular, complete sequencetRNA pseudouridine synthase1e-0757
NC_008820:2027977:204747120474712048358888Prochlorococcus marinus str. MIT 9303, complete genometRNA pseudouridine synthase A1e-0757
NC_010718:237962:237962237962238723762Natranaerobius thermophilus JW/NM-WN-LF, complete genometRNA pseudouridine synthase A2e-0756.6
NC_014501:5471984:548129454812945482148855Cyanothece sp. PCC 7822 chromosome, complete genometRNA pseudouridine synthase A1e-0756.6
NC_007516:347824:363780363780364661882Synechococcus sp. CC9605, complete genometRNA pseudouridine synthase A2e-0756.2
NC_007514:1840971:184427918442791845010732Chlorobium chlorochromatii CaD3, complete genometRNA pseudouridine synthase5e-0754.7
NC_015760:123929:130691130691131437747Streptococcus salivarius CCHSS3, complete genometRNA pseudouridine synthase A6e-0754.7
NC_019771:4459000:447875344787534479580828Anabaena cylindrica PCC 7122, complete genometRNA pseudouridine synthase A8e-0754.3
NC_010556:141374:142165142165142914750Exiguobacterium sibiricum 255-15, complete genometRNA pseudouridine synthase A1e-0653.5
NC_008391:111217:139653139653140465813Burkholderia cepacia AMMD chromosome 2, complete sequencetRNA pseudouridine synthase A1e-0653.5
NC_014958:557208:584366584366585166801Deinococcus maricopensis DSM 21211 chromosome, complete genometRNA pseudouridine synthase A6e-0651.2
NC_013854:2714033:273074827307482731485738Azospirillum sp. B510, complete genometRNA pseudouridine synthase A7e-0651.2