Pre_GI Gene

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Host: NC_010572 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010572:3314500 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
331470233163211620putative ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
33163893317240852hypothetical proteinBLASTP
33172623318116855putative pseudouridine synthaseQuickGO ontologyBLASTP
33182073318734528putative 50S ribosomal protein L17QuickGO ontologyBLASTP
331891633199381023RNA polymerase alpha subunitQuickGO ontologyBLASTP
33200763320480405putative 30S ribosomal protein S11QuickGO ontologyBLASTP
33205853320965381putative 30S ribosomal protein S13QuickGO ontologyBLASTP
33211603321273114putative 50S ribosomal protein L36QuickGO ontologyBLASTP
33213333321554222putative translation initiation factor IF-1QuickGO ontologyBLASTP
33217283322564837putative methionine aminopeptidaseQuickGO ontologyBLASTP
33226973323356660putative adenylate kinaseQuickGO ontologyBLASTP
332335633246691314putative preprotein translocase SecYQuickGO ontologyBLASTP
33250523325507456putative 50S ribosomal protein L15QuickGO ontologyBLASTP
33255093325691183putative 50S ribosomal protein L30QuickGO ontologyBLASTP
33256913326296606putative 30S ribosomal protein S5QuickGO ontologyBLASTP
33263443326727384putative 50S ribosomal protein L18QuickGO ontologyBLASTP
33267303327269540putative 50S ribosomal protein L6QuickGO ontologyBLASTP
33272913327689399putative 30S ribosomal protein S8QuickGO ontologyBLASTP
33279143328099186putative 30S ribosomal protein S14QuickGO ontologyBLASTP
33281023328659558putative 50S ribosomal protein L5QuickGO ontologyBLASTP
33286593328982324putative 50S ribosomal protein L24QuickGO ontologyBLASTP
33289853329353369putative 50S ribosomal protein L14QuickGO ontologyBLASTP
33294613329745285putative 30S ribosomal protein S17QuickGO ontologyBLASTP
33297453329969225putative 50S ribosomal protein L29QuickGO ontologyBLASTP
33299693330388420putative 50S ribosomal protein L16QuickGO ontologyBLASTP
33303943331224831putative 30S ribosomal protein S3QuickGO ontologyBLASTP
33312243331595372putative 50S ribosomal protein L22QuickGO ontologyBLASTP
33316153331896282putative 30S ribosomal protein S19QuickGO ontologyBLASTP
33319093332745837putative 50S ribosomal protein L2QuickGO ontologyBLASTP
33327853333108324putative 50S ribosomal protein L23QuickGO ontologyBLASTP
33331083333758651putative 50S ribosomal protein L4QuickGO ontologyBLASTP
33337633334407645putative 50S ribosomal protein L3QuickGO ontologyBLASTP
33344223334730309putative 30S ribosomal protein S10QuickGO ontologyBLASTP
33354083335608201hypothetical protein
33358073336532726putative trypsin-like proteaseQuickGO ontologyBLASTP
33366263337228603putative two-component system response regulatorQuickGO ontologyBLASTP
33371973337496300hypothetical protein
33376523338152501hypothetical protein
333815633444196264hypothetical proteinBLASTP