Pre_GI: BLASTP Hits

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Query: NC_009439:1174432:1180935 Pseudomonas mendocina ymp, complete genome

Start: 1180935, End: 1181354, Length: 420

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007963:1190847:120958812095881210025438Chromohalobacter salexigens DSM 3043, complete genomePilT protein-like protein5e-37152
NC_011761:1155636:117746311774631177891429Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeplasmid stability protein5e-29125
NC_000914:198000:198297198297198719423Rhizobium sp. NGR234 plasmid pNGR234a, complete sequenceY4jK8e-26115
NC_009959:55567:580425804258482441Dinoroseobacter shibae DFL 12 plasmid pDSHI05, complete sequencePilT domain-containing protein1e-24112
NC_010513:2452811:245281124528112453239429Xylella fastidiosa M12 chromosome, complete genomeplasmid stabilization protein7e-23105
NC_014752:1363562:136663913666391367058420Neisseria lactamica ST-640, complete genometrafficking protein B6e-23105
NC_010831:2078329:211296121129612113386426Chlorobium phaeobacteroides BS1, complete genomePilT protein domain protein6e-23105
NC_006576:2683467:202620262481456Synechococcus elongatus PCC 6301, complete genomesimilar to plasmid stabilization protein StbB homolog2e-21100
NC_007604:1586243:160105616010561601511456Synechococcus elongatus PCC 7942, complete genomeplasmid stabilization protein StbB-like2e-21100
NC_012988:2455807:250322225032222503659438Methylobacterium extorquens DM4, complete genomeplasmid stability protein2e-1890.9
NC_009925:647752:669741669741670112372Acaryochloris marina MBIC11017, complete genomeplasmid stability protein, putative1e-1788.6
NC_017059:1727095:173726917372691737694426Rhodospirillum photometricum DSM 122, complete genomePutative plasmid stability-like protein1e-1788.2
NC_008789:835909:875566875566876033468Halorhodospira halophila SL1, complete genomenucleic acid-binding protein contains PIN domain-like protein8e-1682.4
NC_013205:644914:649702649702650109408Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,PilT protein domain protein1e-1478.2
NC_009720:5046861:505621950562195056662444Xanthobacter autotrophicus Py2, complete genomePilT domain-containing protein4e-1476.6
NC_019940:3518670:353306135330613533495435Thioflavicoccus mobilis 8321 chromosome, complete genomenucleic acid-binding protein, contains PIN domain4e-1476.6
NC_007005:4062311:408154340815434081995453Pseudomonas syringae pv. syringae B728a, complete genomePilT protein, N-terminal2e-1374.3
NC_011901:2202690:221248522124852212892408Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completePilT protein-like protein5e-1373.2
NC_012751:942315:969318969318969734417Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeaddiction module, PIN domain protein7e-1165.9
NC_014722:1467996:147520314752031475676474Burkholderia rhizoxinica HKI 454, complete genomePlasmid stability protein stbB2e-1064.3
NC_012912:4167429:417212441721244172528405Dickeya zeae Ech1591, complete genomePilT protein domain protein3e-1063.9
NC_012660:5242392:525619252561925256599408Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein3e-1063.9
NC_010995:4297361:431397843139784314382405Cellvibrio japonicus Ueda107, complete genomePIN (PilT N terminus) domain4e-1063.5
NC_015730:3662934:367261836726183673034417Roseobacter litoralis Och 149 chromosome, complete genomehypothetical protein5e-1063.2
NC_015581:1043394:105384510538451054243399Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomePilT protein domain-containing protein5e-1063.2
NC_004851:191709:198117198117198515399Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceplasmid maintenance protein7e-1062.8
NC_017319:192482:198045198045198443399Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceplasmid maintenance protein7e-1062.8
NC_015578:61820:691206912069557438Treponema primitia ZAS-2 chromosome, complete genomeputative virulence-associated protein2e-0961.6
NC_013530:1649214:166735116673511667767417Xylanimonas cellulosilytica DSM 15894, complete genomePilT protein domain protein2e-0961.2
NC_009053:1942973:196811919681191968505387Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein2e-0961.2
NC_012751:409333:426803426803427222420Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeaddiction module, PIN domain protein2e-0961.2
NC_015740:2407500:242307824230782423482405Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein2e-0960.8
NC_006672:47610:514515145151879429Gluconobacter oxydans 621H plasmid pGOX1, complete sequencePlasmid stability-like protein3e-0960.5
NC_010278:1918000:192941819294181929816399Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,nucleic acid-binding protein4e-0960.1
NC_015578:3980496:401721640172164017653438Treponema primitia ZAS-2 chromosome, complete genomevirulence associated protein C6e-0959.7
NC_007507:101887:111429111429111830402Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,hypothetical protein6e-0959.3
NC_009656:5505413:552865755286575528773117Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-0858.9
NC_019902:831911:852665852665853093429Thioalkalivibrio nitratireducens DSM 14787, complete genomeVapC toxin protein1e-0858.2
NC_021150:3667176:368595836859583686368411Azotobacter vinelandii CA6, complete genomePilT domain-containing protein3e-0857.4
NC_012560:3667177:368595936859593686369411Azotobacter vinelandii DJ, complete genomePilT domain-containing protein3e-0857.4
NC_010939:1986263:199298919929891993387399Actinobacillus pleuropneumoniae serovar 7 str. AP76, completehypothetical protein1e-0755.5
NC_014366:3653190:367297936729793673524546Gamma proteobacterium HdN1, complete genomePIN (PilT N terminus) domain protein1e-0755.1
NC_013862:27991:402040204445426Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequencePilT protein domain protein2e-0754.3
NC_003198:3042000:305138830513883051786399Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein (assiciated with virulence)4e-0753.5
NC_004631:3030580:303729530372953037693399Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein4e-0753.5
NC_016832:3020000:302593530259353026333399Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,PilT protein domain protein4e-0753.5
NC_015382:266000:274647274647275057411Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequencePIN domain protein7e-0752.8
NC_015942:2213710:222199022219902222394405Acidithiobacillus ferrivorans SS3 chromosome, complete genomePilT protein domain-containing protein1e-0652
NC_010831:40000:577155771558161447Chlorobium phaeobacteroides BS1, complete genomePilT protein domain protein1e-0651.6
NC_002939:2697767:271099627109962711397402Geobacter sulfurreducens PCA, complete genomevirulence associated protein C2e-0650.8
NC_013889:1623697:163398116339811634379399Thioalkalivibrio sp. K90mix chromosome, complete genomePilT protein domain protein8e-0649.3
NC_005125:4557889:457538145753814575791411Gloeobacter violaceus PCC 7421, complete genomevirulence-associated protein VapC homolog9e-0648.9