Pre_GI: BLASTP Hits

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Query: NC_009089:581655:590184 Clostridium difficile 630, complete genome

Start: 590184, End: 590576, Length: 393

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:581655:58476958476960656321795Clostridium difficile 630, complete genome6e-73271
NC_013895:1332832:136449813644981365004507Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein1e-70264
NC_021175:1597613:159712315971231597629507Streptococcus oligofermentans AS 1.3089, complete genomeconjugative transposon membrane protein1e-70264
NC_013798:1778758:178118917811891781581393Streptococcus gallolyticus UCN34, complete genomeTn916 conserved hypothetical protein3e-70263
NC_016630:1247251:125990712599071260338432Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein7e-70261
NC_009089:3889811:390424339042433904635393Clostridium difficile 630, complete genomeconjugative transposon membrane protein3e-56216
NC_017341:428500:439417439417439812396Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,hypothetical protein9e-50195
NC_017347:424500:435755435755436150396Staphylococcus aureus subsp. aureus T0131 chromosome, completeConjugative transposon membrane protein9e-50195
NC_002758:434462:448587448587449024438Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein7e-50195
NC_009089:428075:447165447165447563399Clostridium difficile 630, complete genomeconjugative transposon protein2e-49193
NC_017179:4023139:403817140381714038560390Clostridium difficile BI1, complete genomeconjugative transposon membrane protein3e-49193
NC_009089:3935500:395739739573973957795399Clostridium difficile 630, complete genomeconjugative transposon membrane protein4e-49192
NC_004668:2198027:220360022036002203989390Enterococcus faecalis V583, complete genomehypothetical protein4e-45179
NC_007103:230872:235027235027235431405Bacillus cereus E33L plasmid pE33L466, complete sequencehypothetical protein2e-1271.2
NC_017201:93500:106586106586106990405Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB26,hypothetical protein6e-1269.3
NC_014172:100718:104868104868105272405Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequencehypothetical protein2e-1168.2