Pre_GI: BLASTP Hits

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Query: NC_009089:428075:448198 Clostridium difficile 630, complete genome

Start: 448198, End: 448701, Length: 504

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:3935500:395843439584343958937504Clostridium difficile 630, complete genomeconjugative transposon protein8e-78288
NC_017179:4023139:403704240370424037539498Clostridium difficile BI1, complete genomeconjugative transposon protein7e-30129
NC_013315:4015119:402902240290224029519498Clostridium difficile CD196 chromosome, complete genomeconjugative transposon protein7e-30129
NC_013316:4095905:410980841098084110305498Clostridium difficile R20291, complete genomeconjugative transposon protein7e-30129
NC_009089:581655:58476958476960656321795Clostridium difficile 630, complete genome9e-1786.3
NC_009089:581655:589599589599590096498Clostridium difficile 630, complete genomeconjugative transposon protein7e-1579.7
NC_016630:1247251:126031312603131260810498Filifactor alocis ATCC 35896 chromosome, complete genomeantirestriction protein (ArdA)2e-1478.6
NC_013895:1332832:136497913649791365473495Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeantirestriction protein2e-1478.6
NC_009089:3889811:390472539047253905222498Clostridium difficile 630, complete genomeputative conjugative transposon antirestriction protein2e-1065.1
NC_009089:428075:447677447677448180504Clostridium difficile 630, complete genomeconjugative tranposon protein9e-0856.2
NC_004668:2198027:225899622589962259496501Enterococcus faecalis V583, complete genomehypothetical protein2e-0755.1
NC_017347:424500:439303439303439803501Staphylococcus aureus subsp. aureus T0131 chromosome, completeConjugative transposon protein3e-0754.3
NC_017341:428500:442965442965443465501Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,putative antirestriction protein3e-0754.3
NC_002758:434462:449748449748450248501Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein3e-0754.3
NC_017179:4023139:403755540375554038058504Clostridium difficile BI1, complete genomeconjugative transposon protein5e-0753.5
NC_013315:4015119:402953540295354030038504Clostridium difficile CD196 chromosome, complete genomeconjugative transposon protein5e-0753.5
NC_013316:4095905:411032141103214110824504Clostridium difficile R20291, complete genomeconjugative tranposon protein5e-0753.5
NC_009089:3935500:395791339579133958416504Clostridium difficile 630, complete genomeconjugative transposon protein2e-0651.6