Pre_GI: BLASTP Hits

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Query: NC_009012:3421000:3424994 Clostridium thermocellum ATCC 27405, complete genome

Start: 3424994, End: 3425308, Length: 315

Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011898:426951:451241451241451558318Clostridium cellulolyticum H10, complete genomeanti-sigma-factor antagonist2e-22103
NC_009922:1:949694969813318Alkaliphilus oremlandii OhILAs, complete genomeanti-sigma-factor antagonist1e-1891.7
NC_014614:6115:108291082911149321Clostridium sticklandii, complete genomeanti sigma b factor antagonist RsbV1e-1685.1
NC_009089:1:913591359446312Clostridium difficile 630, complete genomeanti-sigma-B factor antagonist2e-1684.3
NC_006582:883922:885435885435885764330Bacillus clausii KSM-K16, complete genomepositive regulator of sigma-B activity1e-1582
NC_010556:2773396:279425227942522794578327Exiguobacterium sibiricum 255-15, complete genomeanti-sigma-factor antagonist1e-1582
NC_018665:2563375:258405825840582584384327Exiguobacterium antarcticum B7 chromosome, complete genomeanti-sigma-factor antagonist1e-1581.6
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome2e-1580.9
NC_018664:1:915791579474318Clostridium acidurici 9a chromosome, complete genomeanti-sigma F factor antagonist SpoIIAA3e-1580.1
NC_018704:347948:351469351469351807339Amphibacillus xylanus NBRC 15112, complete genomeanti-sigma B factor antagonist7e-1579.3
NC_004193:375416:655040655040655372333Oceanobacillus iheyensis HTE831, complete genomepositive regulator of sigma-B activity2e-1477.8
NC_014219:567033:568111568111568440330Bacillus selenitireducens MLS10 chromosome, complete genomeanti-sigma-factor antagonist2e-1477.8
NC_010572:3878660:388229938822993882652354Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative anti-sigma factor antagonist2e-1374.3
NC_003155:5616000:563159856315985631939342Streptomyces avermitilis MA-4680, complete genomeanti-sigma factor antagonist2e-1374.3
NC_016114:3938721:395672339567233957076354Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeanti-sigma-factor antagonist2e-1374.3
NC_012673:2023297:202642320264232026749327Exiguobacterium sp. AT1b, complete genomeanti-sigma-factor antagonist4e-1373.2
NC_013595:480000:498355498355498705351Streptosporangium roseum DSM 43021, complete genomeputative anti-anti-sigma regulatory factor1e-1168.6
NC_016109:5543112:556195355619535562288336Kitasatospora setae KM-6054, complete genomeputative antagonist protein2e-1167.8
NC_013171:1:861286128917306Anaerococcus prevotii DSM 20548, complete genomeanti-sigma-factor antagonist2e-1167.4
NC_014165:27246:439594395944309351Thermobispora bispora DSM 43833 chromosome, complete genomeanti-sigma-factor antagonist4e-1167
NC_012121:1578190:159507715950771595403327Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative anti-sigmaB factor antagonist3e-1167
NC_020410:495184:495184495184495513330Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeanti-anti-sigma factor (antagonist of RsbW)4e-1166.6
NC_019842:484933:484607484607484936330Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,anti-sigma B factor antagonist4e-1166.6
NC_009725:496443:496443496443496772330Bacillus amyloliquefaciens FZB42, complete genomeRsbV4e-1166.6
NC_014479:509919:509919509919510248330Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeanti-anti-sigma factor (antagonist of RsbW)4e-1166.6
NC_000964:521975:521649521649521978330Bacillus subtilis subsp. subtilis str. 168, complete genomeanti-anti-sigma factor (antagonist of RsbW)7e-1165.9
NC_019896:3491000:351845435184543518783330Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeAnti-anti-sigma-B factor7e-1165.9
NC_014976:2735423:273649227364922736821330Bacillus subtilis BSn5 chromosome, complete genomeanti-anti-sigma factor (antagonist of RsbW)7e-1165.9
NC_012225:2474042:248566824856682486003336Brachyspira hyodysenteriae WA1, complete genomeanti-sigma factor antagonist9e-1165.5
NC_016047:637778:638847638847639176330Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeanti-sigma-B factor antagonist1e-1065.1
NC_013510:3065000:308423830842383084558321Thermomonospora curvata DSM 43183, complete genomeanti-sigma-factor antagonist2e-1064.7
NC_019908:21970:317813178132116336Brachyspira pilosicoli P43/6/78 chromosome, complete genomeanti sigma factor antagonist2e-1064.7
NC_014330:609982:633256633256633591336Brachyspira pilosicoli 95/1000 chromosome, complete genomeanti sigma factor antagonist2e-1064.7
NC_018604:2053585:207966620796662080001336Brachyspira pilosicoli WesB complete genomeanti sigma factor antagonist2e-1064.7
NC_018607:805966:812483812483812818336Brachyspira pilosicoli B2904 chromosome, complete genomeanti sigma factor antagonist2e-1064.7
NC_017191:467207:467207467207467536330Bacillus amyloliquefaciens XH7 chromosome, complete genomeanti-anti-sigma factor3e-1063.5
NC_017190:466236:465910465910466239330Bacillus amyloliquefaciens LL3 chromosome, complete genomeanti-anti-sigma factor3e-1063.5
NC_017188:461177:461177461177461506330Bacillus amyloliquefaciens TA208 chromosome, complete genomeanti-anti-sigma factor3e-1063.5
NC_014551:483773:483773483773484102330Bacillus amyloliquefaciens DSM 7, complete genomeanti-anti-sigma factor (antagonist of RsbW)4e-1063.2
NC_016593:2370000:239146523914652391815351Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeanti-sigma F factor antagonist1e-0962
NC_015714:238891:239788239788240333546Treponema paraluiscuniculi Cuniculi A chromosome, complete genomeanti sigma factor antagonist2e-0961.6
NC_021177:7870464:789028478902847890640357Streptomyces fulvissimus DSM 40593, complete genomeStage II sporulation protein2e-0961.2
NC_009616:1604276:161012816101281610460333Thermosipho melanesiensis BI429 chromosome, complete genomeanti-sigma-factor antagonist8e-0959.3
NC_017195:2273216:229334422933442293697354Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeanti-sigma F factor antagonist2e-0858.2
NC_014165:374674:401994401994402341348Thermobispora bispora DSM 43833 chromosome, complete genomeanti-sigma-factor antagonist6e-0856.2
NC_010814:2217153:224222722422272242562336Geobacter lovleyi SZ, complete genomeanti-sigma-factor antagonist9e-0855.5
NC_014315:3207684:321372232137223214057336Nitrosococcus watsoni C-113 chromosome, complete genomeanti-sigma-factor antagonist2e-0754.3
NC_011729:4073761:407376140737614074090330Cyanothece sp. PCC 7424 chromosome, complete genomeanti-sigma-factor antagonist5e-0753.1
NC_007512:944941:984010984010984348339Pelodictyon luteolum DSM 273, complete genomeanti-anti-sigma regulatory factor, SpoIIAA1e-0652
NC_008510:995612:101808310180831018418336Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,Anti-sigma factor antagonist1e-0651.6
NC_019904:5526000:553923155392315539575345Echinicola vietnamensis DSM 17526 chromosome, complete genomeanti-anti-sigma regulatory factor3e-0650.4
NC_003155:590500:605005605005605373369Streptomyces avermitilis MA-4680, complete genomeanti-sigma factor antagonist3e-0650.4
NC_007484:3358000:336341133634113363746336Nitrosococcus oceani ATCC 19707, complete genomeAnti-sigma factor antagonist7e-0649.3