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Query: NC_008593:1917118:1938130 Clostridium novyi NT, complete genome

Start: 1938130, End: 1938726, Length: 597

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015425:2144639:216385521638552164436582Clostridium botulinum BKT015925 chromosome, complete genomesiroheme synthase1e-50199
NC_013316:3863728:387479338747933875371579Clostridium difficile R20291, complete genomeputative siroheme synthase3e-38158
NC_009089:3998347:400938940093894009967579Clostridium difficile 630, complete genomeputative siroheme synthase8e-38156
NC_009633:74500:809718097181699729Alkaliphilus metalliredigens QYMF chromosome, complete genomesiroheme synthase3e-27121
NC_015519:488550:499435499435500004570Tepidanaerobacter sp. Re1 chromosome, complete genomesiroheme synthase1e-26119
NC_014314:404315:424104424104424745642Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completesiroheme synthase2e-23108
NC_014829:988980:100240310024031003032630Bacillus cellulosilyticus DSM 2522 chromosome, complete genomesiroheme synthase7e-23107
NC_010382:3350816:335800033580003358638639Lysinibacillus sphaericus C3-41, complete genomeprecorrin-2 dehydrogenase4e-23107
NC_014622:4361553:437613643761364376783648Paenibacillus polymyxa SC2 chromosome, complete genomesiroheme synthase4e-23107
NC_015589:1630461:164731916473191647960642Desulfotomaculum ruminis DSM 2154 chromosome, complete genomesiroheme synthase2e-22105
NC_015172:515557:518946518946519584639Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeprecorrin-2 dehydrogenase5e-22103
NC_016629:3254000:325716832571683257887720Desulfovibrio africanus str. Walvis Bay chromosome, completesiroheme synthase6e-22103
NC_020164:280087:292550292550293167618Staphylococcus warneri SG1, complete genomeprecorrin-2 dehydrogenase2e-21101
NC_011126:281926:304211304211304759549Hydrogenobaculum sp. Y04AAS1, complete genomesiroheme synthase6e-1994
NC_019977:828427:841329841329842000672Methanomethylovorans hollandica DSM 15978, complete genomesiroheme synthase, N-terminal domain protein3e-1891.7
NC_014973:4630132:465942046594204660094675Geobacter sp. M18 chromosome, complete genomesiroheme synthase3e-1891.7
NC_014972:3000138:300223530022353002900666Desulfobulbus propionicus DSM 2032 chromosome, complete genomesiroheme synthase3e-1891.7
NC_015064:2421034:245288024528802453542663Acidobacterium sp. MP5ACTX9 chromosome, complete genomesiroheme synthase3e-1891.7
NC_007350:2460134:246766024676602468271612Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,hypothetical protein5e-1890.9
NC_007984:221030:2284092284092297971389Baumannia cicadellinicola str. Hc (Homalodisca coagulata), completesiroheme synthase9e-1890.1
NC_016627:2023750:204420820442082044699492Clostridium clariflavum DSM 19732 chromosome, complete genomesiroheme synthase2e-1789
NC_020389:1777409:179829617982961798967672Methanosarcina mazei Tuc01, complete genomeSiroheme synthase / Precorrin-2 oxidase/Sirohydrochlorin ferrochelatase2e-1789
NC_013209:2384826:2386342238634223877451404Acetobacter pasteurianus IFO 3283-01, complete genomesiroheme synthase3e-1788.2
NC_017100:2383487:2387549238754923889521404Acetobacter pasteurianus IFO 3283-03, complete genomesiroheme synthase3e-1788.2
NC_017108:2383370:2384886238488623862891404Acetobacter pasteurianus IFO 3283-12, complete genomesiroheme synthase3e-1788.2
NC_017111:2383388:2384904238490423863071404Acetobacter pasteurianus IFO 3283-32, complete genomesiroheme synthase3e-1788.2
NC_017121:2383375:2384891238489123862941404Acetobacter pasteurianus IFO 3283-07, complete genomesiroheme synthase3e-1788.2
NC_017125:2383467:2387529238752923889321404Acetobacter pasteurianus IFO 3283-22, complete genomesiroheme synthase3e-1788.2
NC_017146:2383509:2387571238757123889741404Acetobacter pasteurianus IFO 3283-26, complete genomesiroheme synthase3e-1788.2
NC_017150:2290681:2294088229408822954911404Acetobacter pasteurianus IFO 3283-01-42C, complete genomesiroheme synthase3e-1788.2
NC_018419:226000:2346532346532361521500Secondary endosymbiont of Ctenarytaina eucalypti chromosome,uroporphyrin-III C-methyltransferase9e-1786.7
NC_016632:285408:2929032929032942911389Serratia symbiotica str. 'Cinara cedri' chromosome, completeuroporphyrin-III C-methyltransferase1e-1685.9
NC_020126:3383902:338560933856093386265657Myxococcus stipitatus DSM 14675, complete genomesiroheme synthase2e-1685.5
NC_003552:661579:679496679496680158663Methanosarcina acetivorans C2A, complete genomeuroporphyrin-III C-methyltransferase3e-1685.1
NC_010001:1702350:170926817092681709735468Clostridium phytofermentans ISDg, complete genomesiroheme synthase3e-1684.7
NC_015574:228948:233237233237233866630Methanobacterium sp. SWAN-1 chromosome, complete genomesiroheme synthase1e-1583.2
NC_019940:2893535:2915948291594829173781431Thioflavicoccus mobilis 8321 chromosome, complete genomeuroporphyrin-III C-methyltransferase5e-1580.9
NC_013850:985331:1003045100304510044601416Klebsiella variicola At-22 chromosome, complete genomeuroporphyrin-III C-methyltransferase5e-1580.9
NC_011296:801612:807728807728808363636Thermodesulfovibrio yellowstonii DSM 11347, complete genomesiroheme synthase6e-1580.5
NC_012559:2854640:285675028567502857733984Laribacter hongkongensis HLHK9, complete genomeCobA24e-1478.2
NC_017353:361350:385106385106385717612Staphylococcus lugdunensis N920143, complete genomehypothetical protein4e-1477.8
NC_016627:4203775:4218278421827842195071230Clostridium clariflavum DSM 19732 chromosome, complete genomeprecorrin-6x reductase1e-1376.6
NC_009848:1494253:151654215165421517045504Bacillus pumilus SAFR-032, complete genomeprecorrin-2 dehydrogenase5e-1374.3
NC_008571:365047:379326379326379919594Gramella forsetii KT0803, complete genomesiroheme synthase8e-1373.6
NC_011898:1558208:1579636157963615808591224Clostridium cellulolyticum H10, complete genomeprecorrin-6x reductase2e-1272.4
NC_014734:3086165:310258131025813103183603Paludibacter propionicigenes WB4 chromosome, complete genomesiroheme synthase2e-1272.4
NC_014507:1558286:156174715617471562367621Methanoplanus petrolearius DSM 11571 chromosome, complete genomesiroheme synthase3e-1272
NC_013517:2413373:243136924313692431806438Sebaldella termitidis ATCC 33386, complete genomesiroheme synthase2e-1168.9
NC_012588:1788084:179640917964091797053645Sulfolobus islandicus M.14.25 chromosome, complete genomesiroheme synthase3e-1168.2
NC_012632:1892112:190043719004371901081645Sulfolobus islandicus M.16.27 chromosome, complete genomesiroheme synthase3e-1168.2
NC_012726:1792344:180066918006691801313645Sulfolobus islandicus M.16.4 chromosome, complete genomesiroheme synthase3e-1168.2
NC_017275:1821913:183023818302381830882645Sulfolobus islandicus HVE10/4 chromosome, complete genomesiroheme synthase3e-1168.2
NC_017276:1685645:169397016939701694614645Sulfolobus islandicus REY15A chromosome, complete genomesiroheme synthase3e-1168.2
NC_013769:1908164:191508719150871915731645Sulfolobus islandicus L.D.8.5 chromosome, complete genomesiroheme synthase5e-1167.8
NC_012622:1859149:186607218660721866716645Sulfolobus islandicus Y.G.57.14 chromosome, complete genomesiroheme synthase5e-1167.8
NC_012589:1917421:192785319278531928497645Sulfolobus islandicus L.S.2.15, complete genomesiroheme synthase5e-1167.8
NC_012623:733638:759003759003759647645Sulfolobus islandicus Y.N.15.51 chromosome, complete genomesiroheme synthase6e-1167.4
NC_011565:385454:393230393230393688459Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,siroheme synthase N-terminal domain protein8e-1167
NC_016791:1132451:1142910114291011441271218Clostridium sp. BNL1100 chromosome, complete genomeprecorrin-6x reductase1e-1066.6
NC_015518:585816:595110595110595766657Acidianus hospitalis W1 chromosome, complete genomesiroheme synthase2e-1065.5
NC_010125:148500:1735401735401749521413Gluconacetobacter diazotrophicus PAl 5, complete genomeputative siroheme synthase5e-1064.3
NC_004557:749330:752229752229752960732Clostridium tetani E88, complete genomeprecorrin-2 dehydrogenase1e-0963.2
NC_015733:3736104:3830128383012838315191392Pseudomonas putida S16 chromosome, complete genomeuroporphyrin-III C-methyltransferase4e-0961.6
NC_002947:4484824:4507388450738845087791392Pseudomonas putida KT2440, complete genomeuroporphyrin-III C-methyltransferase8e-0960.1
NC_008343:823093:8277318277318290441314Granulibacter bethesdensis CGDNIH1, complete genomeprecorrin-2 dehydrogenase1e-0860.1
NC_009012:2953638:299484429948442995272429Clostridium thermocellum ATCC 27405, complete genomeprecorrin-2 oxidase / ferrochelatase1e-0859.3
NC_014328:3482980:349912934991293499791663Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeprecorrin-2 dehydrogenase2e-0755.8
NC_018876:2380018:239239423923942392990597Methanolobus psychrophilus R15 chromosome, complete genomesiroheme synthase7e-0753.9
NC_012121:1894148:190610019061001906555456Staphylococcus carnosus subsp. carnosus TM300, complete genomeSirA2e-0652.4