Pre_GI: BLASTP Hits

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Query: NC_008262:67711:80628 Clostridium perfringens SM101, complete genome

Start: 80628, End: 81692, Length: 1065

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:2556457:257365025736502574219570Clostridium perfringens str. 13, complete genomehypothetical protein2e-85316
NC_003366:2556457:257315625731562573617462Clostridium perfringens str. 13, complete genomehypothetical protein6e-82304
NC_006177:2943259:2964845296484529659421098Symbiobacterium thermophilum IAM 14863, complete genomeiron ABC transporter substrate-binding protein2e-1893.6
NC_016935:4326644:4347412434741243485181107Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein8e-1581.6
NC_015690:4592582:4607271460727146083771107Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein9e-1581.3
NC_019897:73957:1160571160571171901134Thermobacillus composti KWC4 chromosome, complete genomeFe3+ ABC transporter substrate-binding protein1e-0964.7
NC_014364:1990000:2000764200076420018251062Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 12e-0963.5
NC_012563:1348500:1363689136368913647351047Clostridium botulinum A2 str. Kyoto, complete genomeABC transporter, substrate-binding protein3e-0963.2
NC_013172:542896:5511245511245522031080Brachybacterium faecium DSM 4810, complete genomeABC-type Fe3+ transport system, periplasmic component4e-0859.3
NC_017297:1280963:129455712945571295387831Clostridium botulinum F str. 230613 chromosome, complete genomeABC transporter substrate-binding protein9e-0858.2
NC_010723:371741:3877433877433887921050Clostridium botulinum E3 str. Alaska E43, complete genomeABC transporter, substrate-binding protein4e-0756.2
NC_009012:1901492:1919023191902319201291107Clostridium thermocellum ATCC 27405, complete genomeextracellular solute-binding protein, family 15e-0755.8
NC_019940:1932906:195125019512501952245996Thioflavicoccus mobilis 8321 chromosome, complete genomeFe3+ ABC transporter substrate-binding protein6e-0755.5
NC_007604:1442500:1460847146084714618691023Synechococcus elongatus PCC 7942, complete genomeiron transport system substrate-binding protein1e-0654.3
NC_011000:1216430:1220139122013912211671029Burkholderia cenocepacia J2315 chromosome 1, complete sequenceextracellular solute-binding protein2e-0653.9
NC_005071:288922:3258733258733269011029Prochlorococcus marinus str. MIT 9313, complete genomeputative iron ABC transporter, substrate binding protein3e-0653.5
NC_009718:1771500:178332717833271784127801Fervidobacterium nodosum Rt17-B1, complete genomeiron ABC transporter substrate-binding protein3e-0652.8
NC_008820:1766973:1801124180112418021521029Prochlorococcus marinus str. MIT 9303, complete genomehypothetical protein5e-0652.4
NC_014166:2649444:2664773266477326657801008Arcobacter nitrofigilis DSM 7299 chromosome, complete genomefamily 1 extracellular solute-binding protein7e-0652
NC_012917:3241196:3291769329176932927851017Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeextracellular solute-binding protein family 18e-0651.6