Pre_GI: BLASTP Hits

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Query: NC_008262:2025699:2027934 Clostridium perfringens SM101, complete genome

Start: 2027934, End: 2028569, Length: 636

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009617:1165539:118662211866221187272651Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeformiminotransferase-cyclodeaminase8e-25113
NC_014328:2326930:233523623352362335874639Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeformiminotransferase-cyclodeaminase6e-2097.4
NC_019908:2496149:252146225214622522100639Brachyspira pilosicoli P43/6/78 chromosome, complete genomeformiminotransferase cyclodeaminase1e-1686.3
NC_010729:1818500:183215918321591832788630Porphyromonas gingivalis ATCC 33277, complete genomeputative methenyltetrahydrofolate cyclohydrolase2e-1685.5
NC_002950:353549:359175359175359804630Porphyromonas gingivalis W83, complete genomehypothetical protein2e-1685.5
NC_015571:1495286:149737614973761498005630Porphyromonas gingivalis TDC60, complete genomeputative methenyltetrahydrofolate cyclohydrolase3e-1685.5
NC_007503:1680513:168490316849031685535633Carboxydothermus hydrogenoformans Z-2901, complete genomemethenyltetrahydrofolate cyclohydrolase4e-1684.7
NC_009615:4425500:445667044566704457293624Parabacteroides distasonis ATCC 8503 chromosome, complete genomeformiminotransferase-cyclodeaminase1e-1480.1
NC_014328:4073714:408803740880374088669633Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeformyltetrahydrofolate cyclohydrolase2e-1066.2
NC_017095:1461520:147554114755411476173633Fervidobacterium pennivorans DSM 9078 chromosome, complete genomemethenyltetrahydrofolate cyclohydrolase2e-1065.9
NC_009828:469778:474348474348474986639Thermotoga lettingae TMO, complete genomeFormiminotransferase-cyclodeaminase4e-1064.7
NC_009089:873295:881326881326881958633Clostridium difficile 630, complete genomemethenyltetrahydrofolate cyclohydrolase6e-1064.3
NC_011653:1728000:173107717310771731700624Thermosipho africanus TCF52B, complete genomemethenyltetrahydrofolate cyclohydrolase1e-0963.5
NC_015519:586000:594135594135594764630Tepidanaerobacter sp. Re1 chromosome, complete genomemethenyltetrahydrofolate cyclohydrolase1e-0963.5
NC_017179:805867:816928816928817560633Clostridium difficile BI1, complete genomemethenyltetrahydrofolate cyclohydrolase1e-0963.2
NC_013315:796313:807374807374808006633Clostridium difficile CD196 chromosome, complete genomemethenyltetrahydrofolate cyclohydrolase1e-0963.2
NC_013316:796895:804914804914805546633Clostridium difficile R20291, complete genomemethenyltetrahydrofolate cyclohydrolase1e-0963.2
NC_015738:2773552:277447027744702775084615Eggerthella sp. YY7918, complete genomemethenyl tetrahydrofolate cyclohydrolase1e-0859.7
NC_007296:1762000:176965717696571770283627Streptococcus pyogenes MGAS6180, complete genomeformiminotetrahydrofolate cyclodeaminase3e-0858.9
NC_015578:1038588:104039010403901041019630Treponema primitia ZAS-2 chromosome, complete genomemethenyl-THF cyclohydrolase3e-0858.5
NC_012108:4937000:4951635495163549532511617Desulfobacterium autotrophicum HRM2, complete genomeFtcD24e-0858.2
NC_014376:1217000:123591012359101236536627Clostridium saccharolyticum WM1 chromosome, complete genomeFormiminotransferase-cyclodeaminase1e-0756.6
NC_014614:1309203:132054013205401321196657Clostridium sticklandii, complete genomeMethenyltetrahydrofolate cyclohydrolase6e-0754.3
NC_002689:78297:919339193392547615Thermoplasma volcanium GSS1, complete genomeFormiminotetrahydrofolate cyclodeaminase2e-0652.4
NC_009921:4948500:497299449729944973800807Frankia sp. EAN1pec, complete genomeFormiminotransferase-cyclodeaminase3e-0652