Pre_GI: BLASTP Hits

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Query: NC_008261:1787345:1800657 Clostridium perfringens ATCC 13124, complete genome

Start: 1800657, End: 1801085, Length: 429

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010674:950276:959666959666960034369Clostridium botulinum B str. Eklund 17B, complete genomephage protein, HK97 gp10 family1e-1994.7
NC_009674:2678932:269283726928372693271435Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeHK97 family phage protein7e-1062.4
NC_012659:3724729:376494237649423765379438Bacillus anthracis str. A0248, complete genomehypothetical protein2e-0961.6
NC_012581:466798:473338473338473775438Bacillus anthracis str. CDC 684 chromosome, complete genomehypothetical protein2e-0961.6
NC_005945:3747652:376541537654153765852438Bacillus anthracis str. Sterne, complete genomehypothetical protein2e-0961.6
NC_007530:3749645:376504237650423765479438Bacillus anthracis str. 'Ames Ancestor', complete genomehypothetical protein2e-0961.6
NC_003997:3724702:376491537649153765352438Bacillus anthracis str. Ames, complete genomehypothetical protein2e-0961.6
NC_011658:2080390:208246020824602082897438Bacillus cereus AH187 chromosome, complete genomehypothetical protein2e-0960.8
NC_016771:2039195:204126520412652041702438Bacillus cereus NC7401, complete genomehypothetical protein2e-0960.8
NC_014624:2878457:287881228788122879303492Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein1e-0858.5
NC_011773:4141765:415693841569384157372435Bacillus cereus AH820 chromosome, complete genomephage protein, HK97 gp10 family6e-0856.2
NC_014328:303063:373016373016373396381Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative phage-like protein2e-0754.3
NC_016935:1636278:166730016673001667689390Paenibacillus mucilaginosus 3016 chromosome, complete genomeHK97 family phage protein1e-0652
NC_015690:1186545:121784812178481218231384Paenibacillus mucilaginosus KNP414 chromosome, complete genomeHK97 family phage protein1e-0652