Pre_GI: BLASTP Hits

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Query: NC_008149:1002453:1026403 Yersinia pestis Nepal516, complete genome

Start: 1026403, End: 1027314, Length: 912

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from Nepal. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:335160:356588356588357571984Shigella flexneri 2002017 chromosome, complete genomeNonspecific DNA binding protein7e-147520
NC_009778:959982:974256974256975185930Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-110397
NC_006370:768745:791491791491792474984Photobacterium profundum SS9 chromosome 1, complete sequencerecombination associated protein1e-104379
NC_011852:211314:212416212416213333918Haemophilus parasuis SH0165, complete genomerecombination associated protein dependent growth factor C4e-82304
NC_009092:3239500:325217432521743253085912Shewanella loihica PV-4, complete genomeputative exonuclease, RdgC8e-82303
NC_008321:3232000:323335832333583234272915Shewanella sp. MR-4, complete genomeputative exonuclease, RdgC9e-82303
NC_018080:1730534:173436917343691735289921Pseudomonas aeruginosa DK2 chromosome, complete genomerecombination associated protein1e-73276
NC_009053:553298:561319561319562221903Actinobacillus pleuropneumoniae L20, complete genomeRecombination-associated protein RdgC3e-73275
NC_013508:876431:888993888993889682690Edwardsiella tarda EIB202, complete genomerecombination-associated protein RdgC3e-73275
NC_007146:1405459:141332914133291414225897Haemophilus influenzae 86-028NP, complete genomerecombination associated protein3e-72271
NC_012660:2045398:204890320489032049823921Pseudomonas fluorescens SBW25 chromosome, complete genomerecombination associated protein3e-70265
NC_009567:904922:918852918852919763912Haemophilus influenzae PittGG chromosome, complete genomerecombination associated protein5e-68258
NC_010645:369408:405880405880406782903Bordetella avium 197N, complete genomerecombination associated protein3e-53208
NC_014307:2760347:279058927905892791512924Ralstonia solanacearum CFBP2957 chromosome, complete genomerecombination associated protein3e-49195
NC_016616:2768053:277026627702662771168903Dechlorosoma suillum PS chromosome, complete genomeDNA recombination-dependent growth factor C6e-49194
NC_003295:659837:664810664810665733924Ralstonia solanacearum GMI1000, complete genomerecombination associated protein8e-47187
NC_013446:1724000:174428917442891745260972Comamonas testosteroni CNB-2, complete genomeputative exonuclease, RdgC5e-44178
NC_010943:1938136:195274719527471953649903Stenotrophomonas maltophilia K279a, complete genomeputative recombination-associated protein6e-43174
NC_017515:1402218:141862614186261419525900Neisseria meningitidis M04-240196 chromosome, complete genomerecombination-associated protein RdgC1e-41170
NC_003116:1018813:101991310199131020812900Neisseria meningitidis Z2491, complete genomerecombination associated protein2e-41169
NC_017512:789600:790700790700791599900Neisseria meningitidis WUE 2594, complete genomerecombination associated protein RdgC2e-41169
NC_017517:898771:899239899239900138900Neisseria meningitidis M01-240355 chromosome, complete genomerecombination-associated protein RdgC2e-41169
NC_017501:1493292:151127015112701512169900Neisseria meningitidis 8013, complete genomerecombination associated protein RdgC2e-41169
NC_008767:804655:805765805765806664900Neisseria meningitidis FAM18, complete genomeRdgC protein2e-41169
NC_017516:1408000:142687814268781427777900Neisseria meningitidis H44/76 chromosome, complete genomerecombination-associated protein RdgC2e-41169
NC_013446:3034486:304803330480333048992960Comamonas testosteroni CNB-2, complete genomeputative exonuclease, RdgC3e-40165
NC_010677:1296000:131357913135791314439861Francisella tularensis subsp. mediasiatica FSC147, complete genomerecombination associated protein2e-29129
NC_014836:1606587:160658716065871607453867Desulfurispirillum indicum S5 chromosome, complete genomehypothetical protein1e-1584