Pre_GI: BLASTP Hits

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Query: NC_007953:353496:357395 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 357395, End: 357709, Length: 315

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:331610:3373573373573386101254Pseudomonas putida ND6 chromosome, complete genomereverse transcriptase2e-2097.8
NC_015733:3736104:3764353376435337656061254Pseudomonas putida S16 chromosome, complete genomereverse transcriptase2e-2097.8
NC_015733:864959:8899838899838912151233Pseudomonas putida S16 chromosome, complete genomereverse transcriptase2e-2097.8
NC_021171:4367834:4374012437401243752561245Bacillus sp. 1NLA3E, complete genomeRNA-directed DNA polymerase6e-1372.8
NC_013792:33893:5021050210514541245Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequenceRNA-directed DNA polymerase (Reverse transcriptase)2e-1271.2
NC_003078:671000:6755736755736768321260Sinorhizobium meliloti 1021 plasmid pSymB, complete sequenceputative reverse transcriptasematurase protein2e-1271.2
NC_005126:1265071:1274750127475012761591410Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-1270.9
NC_014228:1712339:1738743173874317400771335Xenorhabdus nematophila ATCC 19061, complete genomePutative reverse transcriptase2e-1270.9
NC_021182:4829000:4843338484333848445821245Clostridium pasteurianum BC1, complete genomeRetron-type reverse transcriptase3e-1270.5
NC_009142:2480608:250647125064712507448978Saccharopolyspora erythraea NRRL 2338, complete genomeRNA-directed DNA polymerase6e-1269.7
NC_011983:1746000:1749627174962717508861260Agrobacterium radiobacter K84 chromosome 2, complete genomereverse transcriptase/maturase protein8e-1268.9
NC_011060:1288862:1305353130535313065941242Pelodictyon phaeoclathratiforme BU-1, complete genomeRNA-directed DNA polymerase1e-1168.6
NC_004463:2158116:2213052221305222142961245Bradyrhizobium japonicum USDA 110, complete genomeprobable maturase; reverse transcriptase1e-1168.2
NC_017249:7993713:8065217806521780664611245Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-1168.2
NC_011059:670345:6709046709046721391236Prosthecochloris aestuarii DSM 271, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-1167
NC_010468:2406387:2411676241167624129981323Escherichia coli ATCC 8739, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-1167
NC_011751:256830:2698272698272710771251Escherichia coli UMN026 chromosome, complete genomeputative reverse transcriptase5e-1166.6
NC_019697:1879769:1893778189377818951931416Chamaesiphon minutus PCC 6605, complete genomeRetron-type reverse transcriptase6e-1166.2
NC_015656:1947810:1961959196195919632241266Frankia symbiont of Datisca glomerata chromosome, complete genomeRNA-directed DNA polymerase3e-1063.9
NC_014228:4360676:437436643743664375328963Xenorhabdus nematophila ATCC 19061, complete genomeputative Reverse transcriptase5e-1063.2
NC_011059:2272747:2285752228575222869931242Prosthecochloris aestuarii DSM 271, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-0961.6
NC_010995:3745957:3788975378897537901831209Cellvibrio japonicus Ueda107, complete genomeputative maturase2e-0961.2
NC_014972:1982315:1989808198980819914241617Desulfobulbus propionicus DSM 2032 chromosome, complete genome2e-0960.8
NC_013223:724394:7518867518867532111326Desulfohalobium retbaense DSM 5692, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)5e-0959.7
NC_014934:244587:2514522514522527051254Cellulophaga algicola DSM 14237 chromosome, complete genomeRNA-directed DNA polymerase (reverse transcriptase)5e-0959.7
NC_014934:3751612:3771375377137537726281254Cellulophaga algicola DSM 14237 chromosome, complete genomeRNA-directed DNA polymerase (reverse transcriptase)5e-0959.7
NC_003552:3479000:3490274349027434915211248Methanosarcina acetivorans C2A, complete genomereverse transcriptase8e-0959.3
NC_015914:4248000:4265401426540142666631263Cyclobacterium marinum DSM 745 chromosome, complete genomeRNA-directed DNA polymerase3e-0857
NC_015914:4248000:4259490425949042607521263Cyclobacterium marinum DSM 745 chromosome, complete genomeRNA-directed DNA polymerase3e-0857
NC_014041:1395761:1412056141205614131291074Zunongwangia profunda SM-A87 chromosome, complete genomereverse transcriptase3e-0753.9
NC_017319:155958:156337156337157140804Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceputative reverse transcriptase4e-0753.5
NC_004851:157675:157675157675158478804Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceputative reverse transcriptase4e-0753.5
NC_009921:4035225:4042777404277740440301254Frankia sp. EAN1pec, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-0753.5
NC_009788:16360:272902729028060771Escherichia coli E24377A plasmid pETEC_73, complete sequencehypothetical protein3e-0753.5
NC_014655:2092365:2098774209877421000061233Leadbetterella byssophila DSM 17132 chromosome, complete genomeRNA-directed DNA polymerase (reverse transcriptase)3e-0753.5
NC_014655:2092365:2096909209690920981411233Leadbetterella byssophila DSM 17132 chromosome, complete genomeRNA-directed DNA polymerase3e-0753.5
NC_010660:33109:3388333883351001218Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencereverse transcriptase5e-0753.1
NC_011745:333061:3383153383153395471233Escherichia coli ED1a chromosome, complete genomeputative reverse transcriptase7e-0752.8
NC_015656:2484749:2495512249551224967891278Frankia symbiont of Datisca glomerata chromosome, complete genomeRNA-directed DNA polymerase2e-0651.2
NC_015656:2900730:2910652291065229119291278Frankia symbiont of Datisca glomerata chromosome, complete genomeRNA-directed DNA polymerase2e-0651.2
NC_015656:132633:1452901452901465671278Frankia symbiont of Datisca glomerata chromosome, complete genomeRNA-directed DNA polymerase2e-0651.2
NC_008576:777949:7862527862527875051254Magnetococcus sp. MC-1, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-0650.1
NC_008576:1413778:1414112141411214151641053Magnetococcus sp. MC-1, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-0650.1
NC_014228:1712339:173777717377771738337561Xenorhabdus nematophila ATCC 19061, complete genomeputative RNA-directed DNA polymerase (fragment)6e-0649.7