Pre_GI: BLASTP Hits

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Query: NC_007951:2087385:2088389 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2088389, End: 2090686, Length: 2298

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015136:1141925:1144886114488611471292244Burkholderia sp. CCGE1001 chromosome 1, complete sequencechromosome partioning protein ParB0967
NC_010002:3002354:3002354300235430044202067Delftia acidovorans SPH-1, complete genomeParB domain protein nuclease7e-87322
NC_008782:3110744:3112655311265531147062052Acidovorax sp. JS42, complete genomeParB domain protein nuclease1e-84315
NC_010170:2246993:2259737225973722618002064Bordetella petrii, complete genomeParB-like nuclease5e-82306
NC_010084:2484000:2533114253311425351622049Burkholderia multivorans ATCC 17616 chromosome 1, completenuclease3e-81303
NC_010943:1332243:1357451135745113594812031Stenotrophomonas maltophilia K279a, complete genomeputative ParB-like nuclease domain protein4e-81303
NC_010170:4800000:4813659481365948157702112Bordetella petrii, complete genomeParB-like nuclease2e-80300
NC_014910:242845:2722082722082742622055Alicycliphilus denitrificans BC chromosome, complete genomeparb domain protein nuclease6e-79296
NC_015422:1694363:1696336169633616983872052Alicycliphilus denitrificans K601 chromosome, complete genomeParB domain-containing protein nuclease8e-79295
NC_008752:725189:7408687408687429132046Acidovorax avenae subsp. citrulli AAC00-1, complete genomeParB domain protein nuclease7e-79295
NC_020829:2152000:2153691215369121557332043Pseudomonas denitrificans ATCC 13867, complete genomeputative chromosome segregation protein6e-79295
NC_011992:1318691:1336817133681713388862070Acidovorax ebreus TPSY, complete genomeParB domain protein nuclease4e-78293
NC_015381:2859000:2900012290001229020632052Burkholderia gladioli BSR3 chromosome 1, complete sequencenuclease6e-78292
NC_009719:336000:3396883396883415981911Parvibaculum lavamentivorans DS-1 chromosome, complete genomenuclease7e-78292
NC_018691:3041851:3056596305659630586742079Alcanivorax dieselolei B5 chromosome, complete genomePutative ParB-like nuclease domain protein (Rc106)2e-76287
NC_016147:1961000:1981052198105219831122061Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative chromosome segregation protein4e-74280
NC_009656:3869281:3874118387411838761962079Pseudomonas aeruginosa PA7 chromosome, complete genomenuclease8e-74278
NC_011365:1171536:1186452118645211885092058Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeParB domain-containing protein nuclease2e-63244
NC_010125:955863:9702419702419722982058Gluconacetobacter diazotrophicus PAl 5, complete genomehypothetical protein3e-63244
NC_010725:3273261:3287698328769832898422145Methylobacterium populi BJ001, complete genomeParB domain protein nuclease6e-62239
NC_010125:74904:8867788677907342058Gluconacetobacter diazotrophicus PAl 5, complete genome5e-61236
NC_012988:1280610:1280610128061012827692160Methylobacterium extorquens DM4, complete genomeplasmid stabilization protein6e-61236
NC_020453:3950838:3981993398199339840082016Agromonas oligotrophica S58 DNA, complete genomehypothetical protein4e-59230
NC_009720:813157:8158788158788180822205Xanthobacter autotrophicus Py2, complete genomenuclease2e-58228
NC_010125:2884762:2891700289170028938322133Gluconacetobacter diazotrophicus PAl 5, complete genomeputative ParB-like nuclease2e-57224
NC_014217:2987450:2989997298999729920602064Starkeya novella DSM 506 chromosome, complete genomeParB domain protein nuclease3e-57223
NC_010338:4108280:4130621413062141327052085Caulobacter sp. K31, complete genomeParB domain protein nuclease1e-55218
NC_009720:5046861:5062145506214550642082064Xanthobacter autotrophicus Py2, complete genomeparB-like partition protein9e-55215
NC_017249:2109843:2109843210984321119662124Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-54214
NC_010158:92819:1125241125241145332010Yersinia pestis Angola plasmid pMT-pPCP, complete sequenceParB domain protein4e-54213
NC_008118:56777:98872988721008812010Yersinia pestis Nepal516 plasmid pMT, complete sequenceDNA-binding protein4e-54213
NC_004838:51013:7073070730727392010Yersinia pestis KIM plasmid pMT-1, complete sequencehypothetical protein4e-54213
NC_005815:61148:8390783907859162010Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completeputative DNA-binding protein4e-54213
NC_009378:106193:1349641349641369732010Yersinia pestis Pestoides F plasmid MT, complete sequenceDNA-binding protein4e-54213
NC_009720:622262:6440426440426461052064Xanthobacter autotrophicus Py2, complete genomeparB-like partition protein3e-54213
NC_015186:2931000:2932165293216529343542190Acidiphilium multivorum AIU301, complete genomehypothetical protein3e-54213
NC_015580:293803:3170463170463192202175Novosphingobium sp. PP1Y, complete genomeParB family chromosome partitioning protein3e-54213
NC_009937:4392108:4392108439210843941712064Azorhizobium caulinodans ORS 571, complete genomeParB-like partition protein2e-50201
NC_009668:445134:4816144816144837642151Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencehypothetical protein2e-50201
NC_007414:56508:7045370453724712019Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequencehypothetical protein9e-48192
NC_002128:35000:4793847938498961959Escherichia coli O157:H7 str. Sakai plasmid pO157, completehypothetical protein9e-48192
NC_014305:126029:1260291260291280322004Erwinia billingiae Eb661 plasmid pEB170, complete sequenceParB-like nuclease7e-43176
NC_003295:2787371:2817109281710928189021794Ralstonia solanacearum GMI1000, complete genomehypothetical protein1e-42175
NC_009254:365812:384821384821385378558Burkholderia vietnamiensis G4 chromosome 3, complete sequence2e-31138
NC_004349:3938:2277922779246531875Shewanella oneidensis MR-1 plasmid pMR-1, complete sequencepartition protein, ParB family, putative3e-21104
NC_015259:485015:5206245206245224651842Polymorphum gilvum SL003B-26A1 chromosome, complete genomeHelix-turn-helix, Fis-type1e-20102
NC_008044:1736000:1745947174594717478181872Silicibacter sp. TM1040, complete genomeParB-like nuclease7e-1996.3
NC_010505:5496170:5520586552058655223731788Methylobacterium radiotolerans JCM 2831, complete genomeParB domain protein nuclease2e-1791.3
NC_011958:735755:755097755097755990894Rhodobacter sphaeroides KD131 chromosome 2, complete genomeParB family protein1e-1689
NC_011963:1979136:1979136197913619809591824Rhodobacter sphaeroides KD131 chromosome 1, complete sequenceParB family protein5e-1687
NC_008254:2496622:249662224966222497092471Mesorhizobium sp. BNC1, complete genomeParB-like nuclease7e-1273.2
NC_014006:344331:3624493624493642091761Sphingobium japonicum UT26S chromosome 1, complete genomeParB-like protein1e-0965.5
NC_016776:5174606:5182449518244951841611713Bacteroides fragilis 638R, complete genomeputative ParB-family protein1e-0862.4
NC_012483:3672768:3696128369612836977171590Acidobacterium capsulatum ATCC 51196, complete genomeParB family protein3e-0861.2
NC_003228:2010643:2067285206728520689971713Bacteroides fragilis NCTC 9343, complete genomeputative ParB-family protein4e-0860.8
NC_007802:179780:194836194836195741906Jannaschia sp. CCS1, complete genomeparB-like partition proteins7e-0860.1
NC_014098:3372000:337624933762493377112864Bacillus tusciae DSM 2912 chromosome, complete genomeparB-like partition protein8e-0859.7
NC_014758:1349494:136281613628161363658843Calditerrivibrio nitroreducens DSM 19672 chromosome, completeparb-like partition protein1e-0759.3
NC_010338:2136193:2155392215539221572181827Caulobacter sp. K31, complete genomeParB domain protein nuclease2e-0758.2
NC_014414:2540189:2540189254018925422132025Parvularcula bermudensis HTCC2503 chromosome, complete genomepartitioning protein-like protein3e-0758.2
NC_009664:452195:4635824635824645861005Kineococcus radiotolerans SRS30216, complete genomeparB-like partition protein3e-0757.8
NC_015675:6276357:6276357627635762780841728Mesorhizobium opportunistum WSM2075 chromosome, complete genomeparB-like partition protein3e-0757.8
NC_019973:5650646:5650646565064656523731728Mesorhizobium australicum WSM2073, complete genomeParB-like partition protein3e-0757.8
NC_014923:5721686:5721686572168657234131728Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeparB-like partition protein3e-0757.8
NC_015389:2101841:211070321107032111569867Coriobacterium glomerans PW2 chromosome, complete genomeparB-like partition protein4e-0757.4
NC_008576:4701930:470765147076514708568918Magnetococcus sp. MC-1, complete genomeparB-like partition proteins5e-0653.9
NC_003210:2879906:288021728802172881071855Listeria monocytogenes EGD-e, complete genomehypothetical protein6e-0653.5
NC_015318:981989:990537990537991346810Hippea maritima DSM 10411 chromosome, complete genomeparB-like partition protein9e-0652.8
NC_009485:3461051:348154334815433481932390Bradyrhizobium sp. BTAi1 chromosome, complete genomeplasmid stabilization protein9e-0652.8