Pre_GI: BLASTP Hits

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Query: NC_007948:1972290:2002112 Polaromonas sp. JS666, complete genome

Start: 2002112, End: 2003467, Length: 1356

Host Lineage: Polaromonas; Polaromonas; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated from sediment contaminated with cis-dichloroethane (cDCE), a common pollutant resulting from widespread manufacture and use of industrial solvents. This bacterium is the only known organism capable of using cDCE as a sole carbon and energy source. The ability of this strain to convert ethene to epoxyethane suggests that the first step in the cDCE biodegradation pathway is the oxidation of cDCE to an epoxide compound. Bacteria that are able to grow on cDCE are rare, and have only been found in very few highly selective artificial environments. The discovery of this bacteria may provide a low cost, self-sustaining bioremediation method in areas where cDCE is a problem contaminant.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014216:1197704:1203140120314012045161377Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomerestriction modification system DNA specificity domain protein4e-76285
NC_015580:293803:2967442967442980541311Novosphingobium sp. PP1Y, complete genomeputative type I restriction-modification system specificity subunit2e-71270
NC_015740:3631326:3647442364744236487821341Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completerestriction modification system DNA specificity domain-containing protein4e-61236
NC_020541:4122852:4135453413545341367511299Rhodanobacter sp. 2APBS1, complete genomerestriction endonuclease S subunit6e-44178
NC_007951:4608560:4610109461010946114251317Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative HsdS protein3e-43176
NC_015458:2338437:2362859236285923641781320Pusillimonas sp. T7-7 chromosome, complete genomehypothetical protein3e-39163
NC_013595:8338619:8351286835128683524941209Streptosporangium roseum DSM 43021, complete genomeRestriction endonuclease S subunits-like protein2e-39163
NC_008609:1976403:199856919985691999480912Pelobacter propionicus DSM 2379, complete genome5e-39162
NC_008541:1042322:1066991106699110681631173Arthrobacter sp. FB24 chromosome 1, complete sequencerestriction modification system DNA specificity domain2e-37157
NC_008825:4025705:7643764388811239Methylibium petroleiphilum PM1, complete genomerestriction modification system, type I3e-37156
NC_004578:1190000:1193259119325911945271269Pseudomonas syringae pv. tomato str. DC3000, complete genometype I restriction-modification system, S subunit2e-36153
NC_012881:3004784:3009162300916230104091248Desulfovibrio salexigens DSM 2638, complete genomerestriction modification system DNA specificity domain protein1e-35151
NC_012779:996879:1000949100094910023341386Edwardsiella ictaluri 93-146, complete genometype I restriction-modification system, S subunit1e-35150
NC_015138:5342473:5353136535313653544401305Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completerestriction modification system DNA specificity domain-containing protein3e-35149
NC_004757:427483:4375654375654389051341Nitrosomonas europaea ATCC 19718, complete genomeRestriction modification system, type I5e-34145
NC_015856:1:1045910459117301272Collimonas fungivorans Ter331 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-32140
NC_012489:209016:2143972143972157341338Gemmatimonas aurantiaca T-27, complete genometype I restriction-modification system restriction subunit1e-30134
NC_008344:554229:5639575639575652251269Nitrosomonas eutropha C91, complete genomerestriction modification system DNA specificity domain4e-30132
NC_008009:4421992:4439377443937744406871311Acidobacteria bacterium Ellin345, complete genomerestriction modification system S subunit4e-29129
NC_014973:3414459:3431795343179534330301236Geobacter sp. M18 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein4e-28126
NC_012796:1645856:1674407167440716756901284Desulfovibrio magneticus RS-1, complete genometype I restriction enzyme S protein4e-28126
NC_015966:1661329:1673910167391016752501341Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-25118
NC_017080:3317701:3326137332613733274981362Phycisphaera mikurensis NBRC 102666, complete genometype I restriction-modification system specificity subunit3e-25116
NC_011185:37922:4654046540478201281Vibrio fischeri MJ11 plasmid pMJ100, complete sequencerestriction modification system S subunit2e-24113
NC_007760:2611608:2627991262799126292051215Anaeromyxobacter dehalogenans 2CP-C, complete genometype I restriction-modification system specificity subunit3e-24113
NC_008786:3323167:3357602335760233592511650Verminephrobacter eiseniae EF01-2, complete genomerestriction modification system DNA specificity domain1e-23111
NC_012793:1718000:1721130172113017224161287Geobacillus sp. WCH70, complete genomerestriction modification system DNA specificity domain protein2e-23110
NC_014165:2928464:2938022293802229392271206Thermobispora bispora DSM 43833 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-22107
NC_011206:2369500:2383643238364323848991257Acidithiobacillus ferrooxidans ATCC 53993, complete genomerestriction modification system DNA specificity domain1e-21104
NC_018867:1407163:1443303144330314445141212Dehalobacter sp. CF chromosome, complete genomeType I restriction-modification system, specificity subunit S1e-21104
NC_014315:1396990:1412173141217314136661494Nitrosococcus watsoni C-113 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-21103
NC_018721:943801:9501419501419514091269Psychroflexus torquis ATCC 700755 chromosome, complete genometype I restriction-modification system, specificity subunit HdsS4e-21103
NC_010175:2488000:2494129249412924954451317Chloroflexus aurantiacus J-10-fl, complete genomerestriction modification system DNA specificity domain1e-20101
NC_013943:2705983:2714857271485727160741218Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein6e-2099.4
NC_010163:614634:6229006229006241591260Acholeplasma laidlawii PG-8A chromosome, complete genometype I site-specific restriction-modification system, S (specificity) subunit2e-1997.4
NC_016831:4556761:4561353456135345626571305Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative Type I restriction-modification system specificity subunit M2e-1997.4
NC_011294:4604283:4608728460872846100321305Salmonella enterica subsp. enterica serovar Enteritidis strtype I restriction-modification system specificity subunit M2e-1997.4
NC_009033:755226:7610247610247624151392Staphylothermus marinus F1, complete genomerestriction modification system DNA specificity domain3e-1997.1
NC_007484:2045500:2045515204551520469661452Nitrosococcus oceani ATCC 19707, complete genomeRestriction modification system DNA specificity domain4e-1996.3
NC_011884:3099488:3118941311894131201791239Cyanothece sp. PCC 7425, complete genomerestriction modification system DNA specificity domain protein9e-1995.1
NC_011274:4577402:4581994458199445832981305Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type I restriction-modification system specificity subunit M2e-1894
NC_020210:1275031:1285198128519812864541257Geobacillus sp. GHH01, complete genomerestriction modification system DNA specificity domain containing protein1e-1791.7
NC_015676:1530000:1544290154429015455401251Methanosalsum zhilinae DSM 4017 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein7e-1789
NC_014011:472650:4809384809384821071170Aminobacterium colombiense DSM 12261 chromosome, complete genomerestriction modification system DNA specificity domain protein6e-1789
NC_007651:3064530:3151479315147931526751197Burkholderia thailandensis E264 chromosome I, complete sequencetype I restriction-modification system specificity determinant1e-1688.6
NC_009778:567000:5837195837195851701452Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-1687.4
NC_013411:284461:2934562934562947451290Geobacillus sp. Y412MC61, complete genomerestriction modification system DNA specificity domain protein4e-1686.7
NC_014915:2427000:2444743244474324460321290Geobacillus sp. Y412MC52 chromosome, complete genomerestriction modification system DNA specificity domain protein4e-1686.7
NC_007677:1354500:1382294138229413835201227Salinibacter ruber DSM 13855, complete genometype I restriction-modification system, S subunit, putative5e-1686.3
NC_013410:1651000:1662625166262516638511227Fibrobacter succinogenes subsp. succinogenes S85 chromosome,restriction modification system DNA specificity domain-containing protein6e-1685.9
NC_013222:817686:836480836480837307828Robiginitalea biformata HTCC2501, complete genometype I restriction system specificity protein9e-1685.1
NC_012483:1813521:1831764183176418330531290Acidobacterium capsulatum ATCC 51196, complete genometype I restriction-modification system, S subunit1e-1584.7
NC_009925:2240871:2242037224203722437581722Acaryochloris marina MBIC11017, complete genometype I restriction-modification system S subunit3e-1583.6
NC_004463:5540924:5557859555785955591601302Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein9e-1582
NC_012968:239476:2505692505692517621194Methylotenera mobilis JLW8, complete genomerestriction modification system DNA specificity domain protein1e-1481.6
NC_015865:229883:2407132407132420051293Thermococcus sp. 4557 chromosome, complete genomerestriction modification system DNA specificity subunit2e-1480.9
NC_015696:285456:2951282951282962971170Francisella sp. TX077308 chromosome, complete genometype I restriction-modification system, specificity subunit S7e-1479
NC_014650:1893758:1911301191130119125301230Geobacillus sp. Y4.1MC1 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein8e-1478.6
NC_013446:1724000:1729654172965417309431290Comamonas testosteroni CNB-2, complete genomehypothetical protein2e-1377.4
NC_015660:1918307:1937843193784319390361194Geobacillus thermoglucosidasius C56-YS93 chromosome, completerestriction modification system DNA specificity domain-containing protein5e-1376.3
NC_020209:4768500:4777702477770247788471146Pseudomonas poae RE*1-1-14, complete genomerestriction modification system DNA specificity subunit1e-1274.7
NC_007759:2097734:2114849211484921160631215Syntrophus aciditrophicus SB, complete genometype I restriction-modification system specificity subunit1e-1274.7
NC_015634:3017564:3034052303405230353621311Bacillus coagulans 2-6 chromosome, complete genomeputative type I restriction modification system, specificity protein2e-1273.9
NC_015578:1430112:1445653144565314468701218Treponema primitia ZAS-2 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein7e-1272.4
NC_006510:1400000:1406089140608914072641176Geobacillus kaustophilus HTA426, complete genometype I restriction-modification system specificity protein1e-1171.6
NC_016629:3789554:3799536379953638008641329Desulfovibrio africanus str. Walvis Bay chromosome, completerestriction modification system DNA specificity domain-containing protein1e-1171.2
NC_018012:598724:6157906157906170821293Thiocystis violascens DSM 198 chromosome, complete genomerestriction endonuclease S subunit4e-1169.7
NC_015740:141910:1526751526751538201146Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeType I restriction modification DNA specificity domain-containing protein5e-1169.3
NC_009925:647752:6642866642866654341149Acaryochloris marina MBIC11017, complete genometype I restriction-modification enzyme S subunit1e-1068.2
NC_014253:431942:4581784581784595631386Methanohalobium evestigatum Z-7303 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-1067.8
NC_015416:621513:6339436339436351991257Methanosaeta concilii GP-6 chromosome, complete genometype I restriction-modification enzyme, S subunit2e-1067.4
NC_014220:1162948:1167996116799611692641269Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomerestriction modification system DNA specificity domain protein2e-0964.3
NC_009712:1008000:1014213101421310155861374Candidatus Methanoregula boonei 6A8, complete genomerestriction modification system DNA specificity subunit2e-0964.3
NC_014034:1036652:1048875104887510505001626Rhodobacter capsulatus SB1003 chromosome, complete genometype I restriction-modification system RcaSBIP subunit S3e-0963.9
NC_015216:1102837:1118283111828311194941212Methanobacterium sp. AL-21 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein3e-0963.5
NC_011662:1:7271727184071137Thauera sp. MZ1T, complete genomerestriction modification system DNA specificity domain protein1e-0861.2
NC_012668:160357:1702231702231714971275Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein2e-0860.8
NC_012668:1623350:1640973164097316422471275Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein2e-0860.8
NC_012668:2258854:2277744227774422790181275Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein2e-0860.8
NC_007969:2885249:2901693290169329029341242Psychrobacter cryohalolentis K5, complete genomerestriction modification system DNA specificity domain3e-0860.1
NC_014206:411143:4175314175314187451215Geobacillus sp. C56-T3 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein5e-0859.7
NC_016593:416661:4224874224874236651179Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein5e-0859.3
NC_012108:2194251:2194251219425121955311281Desulfobacterium autotrophicum HRM2, complete genomeHsdS26e-0859.3
NC_013235:1218378:1225507122550712267091203Nakamurella multipartita DSM 44233, complete genomerestriction modification system DNA specificity domain protein4e-0756.6
NC_006510:372826:3786463786463796861041Geobacillus kaustophilus HTA426, complete genometype I restriction-modification system S subunit4e-0756.2
NC_019896:3311000:3323359332335933246391281Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completerestriction modification system DNA specificity domain-containing protein8e-0755.5
NC_017093:7255652:7266636726663672678231188Actinoplanes missouriensis 431, complete genomeputative restriction-modification system DNA specificity domain5e-0653.1