Pre_GI: BLASTP Hits

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Query: NC_007613:4217557:4246040 Shigella boydii Sb227, complete genome

Start: 4246040, End: 4246963, Length: 924

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010658:4494103:450330245033024504249948Shigella boydii CDC 3083-94, complete genome2e-178624
NC_012967:4449576:4458714445871444603661653Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein7e-176616
NC_012947:3947238:3953742395374239553941653Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein7e-176616
NC_010498:4821519:4830658483065848323111654Escherichia coli SMS-3-5, complete genome2e-169594
NC_011742:4795733:4804871480487148064541584Escherichia coli S88 chromosome, complete genomehypothetical protein2e-154545
AC_000091:4472000:4480117448011744819311815Escherichia coli W3110 DNA, complete genomehypothetical protein3e-131468
NC_010473:4564590:4575268457526845770821815Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein3e-131468
NC_000913:4462782:4473460447346044752741815Escherichia coli K12, complete genomehypothetical protein3e-131468