Pre_GI: BLASTP Hits

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Query: NC_007613:4156841:4165279 Shigella boydii Sb227, complete genome

Start: 4165279, End: 4166415, Length: 1137

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:4395156:4399994439999444011301137Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex subunit0721
NC_011415:4582388:4587364458736445885001137Escherichia coli SE11 chromosome, complete genomephosphonate metabolism protein0721
CU928160:4395156:4399994439999444011301137Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex subunit0721
NC_009800:4332229:4340652434065243417881137Escherichia coli HS, complete genomephosphonate metabolism protein PhnM0721
CP002185:4566150:4574573457457345757091137Escherichia coli W, complete genomecarbon-phosphorus lyase complex subunit0721
NC_009801:4643000:4647968464796846491041137Escherichia coli E24377A, complete genomephosphonate metabolism protein PhnM0717
CU928145:4695932:4700770470077047019061137Escherichia coli 55989 chromosome, complete genomecarbon-phosphorus lyase complex subunit0716
NC_011748:4695932:4700770470077047019061137Escherichia coli 55989, complete genomecarbon-phosphorus lyase complex subunit0716
NC_013364:5040268:5048691504869150498271137Escherichia coli O111:H- str. 11128, complete genomecarbon-phosphorus lyase complex subunit PhnM0716
NC_013353:5022196:5027171502717150283071137Escherichia coli O103:H2 str. 12009, complete genomecarbon-phosphorus lyase complex subunit PhnM0714
AP010958:5022196:5027171502717150283071137Escherichia coli O103:H2 str. 12009 DNA, complete genomecarbon-phosphorus lyase complex subunit PhnM0714
NC_007384:4530000:4534882453488245360181137Shigella sonnei Ss046, complete genomephosphonate metabolism0712
NC_016822:4686971:4691809469180946929451137Shigella sonnei 53G, complete genomephosphonate metabolism protein PhnM0712
NC_010498:4656716:4661579466157946627151137Escherichia coli SMS-3-5, complete genomephosphonate metabolism protein PhnM0712
NC_013941:5013695:5019803501980350209391137Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephosphonate metabolism protein PhnM0711
NC_011750:4719477:4724350472435047254861137Escherichia coli IAI39 chromosome, complete genomecarbon-phosphorus lyase complex subunit0710
NC_011751:4795928:4802188480218848033241137Escherichia coli UMN026 chromosome, complete genomecarbon-phosphorus lyase complex subunit0710
NC_010468:4305105:4316743431674343178791137Escherichia coli ATCC 8739, complete genomephosphonate metabolism protein PhnM0709
NC_012947:4106031:4118068411806841192041137Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephosphonate metabolism protein PhnM0708
NC_002695:5164819:5170937517093751720731137Escherichia coli O157:H7 str. Sakai, complete genomePhnM0708
NC_002655:5194804:5200922520092252020581137Escherichia coli O157:H7 EDL933, complete genomephosphonate metabolism0708
NC_011353:5240020:5246137524613752472731137Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephosphonate metabolism protein PhnM0708
NC_013008:5196080:5202198520219852033341137Escherichia coli O157:H7 str. TW14359 chromosome, complete genomecarbon-phosphorus lyase complex subunit0708
AC_000091:4313167:4320760432076043218961137Escherichia coli W3110 DNA, complete genomecarbon-phosphorus lyase complex subunit0707
CP002516:4431235:4443380444338044445161137Escherichia coli KO11, complete genomephosphonate metabolism protein PhnM0707
NC_000913:4307471:4314105431410543152411137Escherichia coli K12, complete genomecarbon-phosphorus lyase complex subunit0707
NC_010473:4409492:4414467441446744156031137Escherichia coli str. K-12 substr. DH10B, complete genomecarbon-phosphorus lyase complex subunit0707
NC_012759:4247865:4252840425284042539761137Escherichia coli BW2952 chromosome, complete genomecarbon-phosphorus lyase complex subunit0707
NC_012967:4289929:4294904429490442960401137Escherichia coli B str. REL606 chromosome, complete genomecarbon-phosphorus lyase complex subunit0707
NC_016902:4431235:4443380444338044445161137Escherichia coli KO11FL chromosome, complete genomephosphonate metabolism protein PhnM0707
NC_008253:4541915:4548688454868845498241137Escherichia coli 536, complete genomeHisM-like integral membrane protein PhnM0706
NC_004431:4867648:4875122487512248762581137Escherichia coli CFT073, complete genomePhnM protein0706
NC_008563:4656000:4662629466262946637651137Escherichia coli APEC O1, complete genomePhnM, carbon-phosphorus lyase complex subunit0701
NC_011742:4569683:4577157457715745782931137Escherichia coli S88 chromosome, complete genomecarbon-phosphorus lyase complex subunit0701
NC_007606:3842708:3855889385588938569411053Shigella dysenteriae Sd197, complete genomephosphonate metabolism0635
NC_012917:569856:5698565698565709921137Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephosphonate metabolism protein PhnM9e-128456
NC_008463:1756434:1756434175643417575971164Pseudomonas aeruginosa UCBPP-PA14, complete genomephosphonate metabolism protein2e-98359
NC_008786:3291700:3313946331394633151061161Verminephrobacter eiseniae EF01-2, complete genomephosphonate metabolism protein PhnM5e-79295
NC_003911:480202:4814694814694826111143Silicibacter pomeroyi DSS-3, complete genomealkylphosphonate utilization protein PhnM8e-64244
NC_011761:2031876:2035265203526520364011137Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completephnM protein3e-62239
NC_011206:1917408:1920797192079719219331137Acidithiobacillus ferrooxidans ATCC 53993, complete genomephosphonate metabolism protein PhnM3e-62239
NC_007520:2305610:2305610230561023067731164Thiomicrospira crunogena XCL-2, complete genomeamidohydrolase-like1e-54213
NC_008740:257434:2590342590342601821149Marinobacter aquaeolei VT8, complete genomeAmidohydrolase 31e-48194
NC_008312:7635217:7644229764422976453771149Trichodesmium erythraeum IMS101, complete genomephosphonate metabolism protein PhnM3e-48192
NC_020388:884935:8856638856638868231161Natronomonas moolapensis 8.8.11 complete genomephosphonate metabolism protein PhnM8e-45181
NC_021182:3525523:3534511353451135356861176Clostridium pasteurianum BC1, complete genomephosphonate metabolism protein PhnM7e-42171
NC_015391:504227:5130555130555142331179Carnobacterium sp. 17-4 chromosome, complete genomeprotein PhnM2e-41169
NC_015944:384119:3938173938173949621146Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequencephosphonate metabolism protein2e-36153