Pre_GI: BLASTP Hits

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Query: NC_007613:4156841:4163526 Shigella boydii Sb227, complete genome

Start: 4163526, End: 4164284, Length: 759

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011750:4719477:472261247226124723370759Escherichia coli IAI39 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein7e-138489
NC_012967:4289929:429316642931664293924759Escherichia coli B str. REL606 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein7e-138489
NC_002655:5194804:519918351991835199941759Escherichia coli O157:H7 EDL933, complete genomephosphonate metabolism2e-137488
NC_002695:5164819:516919851691985169956759Escherichia coli O157:H7 str. Sakai, complete genomePhnP2e-137488
NC_011353:5240020:524439852443985245156759Escherichia coli O157:H7 str. EC4115 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein2e-137488
NC_013008:5196080:520045952004595201217759Escherichia coli O157:H7 str. TW14359 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein2e-137488
NC_013941:5013695:501806550180655018823759Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephosphonate utilization protein2e-137488
NC_011751:4795928:480045048004504801208759Escherichia coli UMN026 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein2e-137488
NC_010498:4656716:465984146598414660599759Escherichia coli SMS-3-5, complete genomephosphonate utilization protein2e-137488
NC_000913:4307471:431236743123674313125759Escherichia coli K12, complete genomecarbon-phosphorus lyase complex accessory protein1e-137488
NC_016902:4431235:444549644454964446254759Escherichia coli KO11FL chromosome, complete genomephosphonate metabolism protein PhnP1e-137488
NC_012947:4106031:412018441201844120942759Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completecarbon-phosphorus lyase complex accessory protein1e-137488
NC_012759:4247865:425110242511024251860759Escherichia coli BW2952 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein1e-137488
AC_000091:4313167:431902243190224319780759Escherichia coli W3110 DNA, complete genomecarbon-phosphorus lyase complex accessory protein1e-137488
CP002516:4431235:444549644454964446254759Escherichia coli KO11, complete genomephosphonate metabolism protein PhnP1e-137488
NC_010473:4409492:441272944127294413487759Escherichia coli str. K-12 substr. DH10B, complete genomecarbon-phosphorus lyase complex accessory protein1e-137488
NC_011742:4569683:457541945754194576177759Escherichia coli S88 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein3e-137487
NC_008563:4656000:466089146608914661649759Escherichia coli APEC O1, complete genomePhnP, carbon-phosphorus lyase complex accessory protein3e-137487
NC_010468:4305105:431885943188594319617759Escherichia coli ATCC 8739, complete genomephosphonate metabolism5e-137486
NC_004431:4867648:487338448733844874142759Escherichia coli CFT073, complete genomePhnP protein1e-136485
NC_016822:4686971:469007146900714690829759Shigella sonnei 53G, complete genomecarbon-phosphorus lyase complex accessory protein7e-136483
NC_007384:4530000:453314445331444533902759Shigella sonnei Ss046, complete genomephosphonate metabolism7e-136483
NC_008253:4541915:454695045469504547708759Escherichia coli 536, complete genomePhnP protein8e-136483
NC_007606:3842708:385792138579213858679759Shigella dysenteriae Sd197, complete genomephosphonate metabolism2e-135481
AP010958:5022196:502543350254335026191759Escherichia coli O103:H2 str. 12009 DNA, complete genomecarbon-phosphorus lyase complex accessory protein PhnP4e-134477
NC_013353:5022196:502543350254335026191759Escherichia coli O103:H2 str. 12009, complete genomecarbon-phosphorus lyase complex accessory protein PhnP4e-134477
CP002185:4566150:457283545728354573593759Escherichia coli W, complete genomecarbon-phosphorus lyase complex accessory protein7e-134476
NC_009801:4643000:464623046462304646988759Escherichia coli E24377A, complete genomephosphonate utilization protein7e-134476
CU928160:4395156:439825643982564399014759Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein6e-134476
CU928145:4695932:469903246990324699790759Escherichia coli 55989 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein6e-134476
NC_011748:4695932:469903246990324699790759Escherichia coli 55989, complete genomecarbon-phosphorus lyase complex accessory protein6e-134476
NC_009800:4332229:433891443389144339672759Escherichia coli HS, complete genomephosphonate utilization protein6e-134476
NC_011415:4582388:458562645856264586384759Escherichia coli SE11 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein6e-134476
NC_011741:4395156:439825643982564399014759Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein6e-134476
NC_013364:5040268:504695350469535047711759Escherichia coli O111:H- str. 11128, complete genomecarbon-phosphorus lyase complex accessory protein PhnP6e-134476
NC_012917:569856:571603571603572400798Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephosphonate metabolism protein PhnP4e-65248
NC_008740:2563278:256749525674952568250756Marinobacter aquaeolei VT8, complete genomebeta-lactamase domain protein4e-63241
NC_007520:2305610:230735023073502308117768Thiomicrospira crunogena XCL-2, complete genomeBeta-lactamase-like3e-60231
NC_008740:257434:260727260727261512786Marinobacter aquaeolei VT8, complete genomebeta-lactamase domain protein2e-57222
NC_008781:2655071:265968926596892660465777Polaromonas naphthalenivorans CJ2, complete genomebeta-lactamase domain protein6e-57220
NC_008463:1756434:175814517581451758915771Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative phosphonate metabolism protein7e-55213
NC_011770:1811874:181187418118741812644771Pseudomonas aeruginosa LESB58, complete genomeputative phosphonate metabolism protein3e-54211
NC_018870:115982:125766125766126554789Thermacetogenium phaeum DSM 12270 chromosome, complete genomebeta-lactamase-like protein3e-21102
NC_014033:675626:689232689232689993762Prevotella ruminicola 23 chromosome, complete genomeputative phnP protein2e-1376.3
NC_011146:382719:407647407647408402756Geobacter bemidjiensis Bem, complete genomebeta-lactamase domain protein1e-1273.6
NC_002939:2697767:270262127026212703376756Geobacter sulfurreducens PCA, complete genomemetallo-beta-lactamase family protein5e-1271.6
NC_015164:1120288:112843711284371129216780Bacteroides salanitronis DSM 18170 chromosome, complete genomebeta-lactamase domain-containing protein1e-1170.1
NC_013730:3956457:395924139592413960002762Spirosoma linguale DSM 74, complete genomebeta-lactamase domain protein2e-1170.1
NC_006347:3390193:339019333901933390951759Bacteroides fragilis YCH46, complete genomeputative hydrolase2e-1169.3
NC_016776:3356718:335844833584483359206759Bacteroides fragilis 638R, complete genomeputative hydrolase4e-1168.6
NC_003228:3323832:332383233238323324590759Bacteroides fragilis NCTC 9343, complete genomeputative hydrolase4e-1168.6
NC_016935:4326644:434857643485764349394819Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein7e-1167.8
NC_015690:4592582:460843446084344609252819Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein6e-1167.8
NC_009615:1305678:132715113271511327906756Parabacteroides distasonis ATCC 8503 chromosome, complete genomehydrolase4e-1065.5
NC_012559:2563922:256533625653362566109774Laribacter hongkongensis HLHK9, complete genomeprobable hydrolase protein5e-1064.7
NC_012225:316000:334085334085334843759Brachyspira hyodysenteriae WA1, complete genomemetal-dependent hydrolase2e-0963.2
NC_016622:1599681:163097816309781631787810Azospirillum lipoferum 4B, complete genomeputative Metal-dependent hydrolase4e-0652