Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1377246 Shigella boydii Sb227, complete genome

Start: 1377246, End: 1377812, Length: 567

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014228:3022903:303904230390423039656615Xenorhabdus nematophila ATCC 19061, complete genomeBaseplate assembly protein V (GpV)6e-39160
NC_014562:1698253:171757117175711718155585Pantoea vagans C9-1 chromosome, complete genomeBaseplate assembly protein V (GpV)7e-39159
NC_015061:1598920:162545916254591626100642Rahnella sp. Y9602 chromosome, complete genomephage baseplate assembly protein V1e-37156
NC_009648:3803622:381568438156843816325642Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage baseplate assembly protein2e-37155
NC_017047:1551836:157687915768791577520642Rahnella aquatilis HX2 chromosome, complete genomephage baseplate assembly protein V2e-37155
NC_012967:2105251:210990021099002110553654Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-35148
NC_016818:1605918:162918116291811629861681Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completephage baseplate assembly protein V8e-35146
NC_020064:871338:890707890707891342636Serratia marcescens FGI94, complete genomephage baseplate assembly protein V1e-34145
NC_012962:4942000:494801549480154948689675Photorhabdus asymbiotica, complete genomeputative phage baseplate assembly protein3e-32137
NC_016845:1773416:179428117942811794853573Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,baseplate assembly protein V4e-30130
NC_003198:4453457:448660044866004487178579Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage baseplate assembly protein2e-28125
NC_014837:3739408:376413337641333764711579Pantoea sp. At-9b chromosome, complete genomephage baseplate assembly protein V1e-27122
NC_014306:103545:127589127589128143555Erwinia billingiae Eb661, complete genomePutative phage baseplate assembly protein2e-2098.6
NC_017505:1013311:102485410248541025456603Neisseria meningitidis alpha710 chromosome, complete genomephage-related baseplate assembly protein V2e-1685.9
NC_010981:1371265:137736413773641377828465Wolbachia pipientis, complete genomebaseplate assembly protein GpV1e-1582.8
NC_012416:1332409:134502813450281345492465Wolbachia sp. wRi, complete genomebaseplate assembly protein V2e-1582
NC_002978:618723:632506632506632970465Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW5, baseplate assembly protein V4e-1580.9
NC_014311:1507945:151468215146821515236555Ralstonia solanacearum PSI07 chromosome, complete genomebacteriophage protein, P2 Baseplate assembly protein8e-1580.1
NC_012416:1079661:109440810944081094872465Wolbachia sp. wRi, complete genomebaseplate assembly protein V7e-1580.1
NC_012416:573202:587949587949588413465Wolbachia sp. wRi, complete genomebaseplate assembly protein V7e-1580.1
NC_020209:3262000:328409532840953284673579Pseudomonas poae RE*1-1-14, complete genomephage baseplate assembly protein V1e-1479.7
NC_010981:314745:352613352613353077465Wolbachia pipientis, complete genomePutative baseplate assembly protein GpV3e-1478.2
NC_010981:242500:252205252205252669465Wolbachia pipientis, complete genomebaseplate assembly protein GpV3e-1478.2
NC_012751:1988280:199972919997292000307579Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completephage baseplate assembly protein8e-1476.6
NC_010981:425387:450539450539451003465Wolbachia pipientis, complete genomebaseplate assembly protein GpV1e-1375.9
NC_010981:314745:325823325823326287465Wolbachia pipientis, complete genomebaseplate assembly protein GpV1e-1375.9
NC_012724:1892000:191220719122071912923717Burkholderia glumae BGR1 chromosome 1, complete genomePhage baseplate assembly protein V3e-1374.7
NC_015276:2023663:202643320264332027098666Marinomonas mediterranea MMB-1 chromosome, complete genomephage baseplate assembly protein V2e-1272.4
NC_012416:753500:771444771444771899456Wolbachia sp. wRi, complete genomebaseplate assembly protein V6e-1270.5
NC_017265:2306500:231435323143532314712360Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,phage-like protein5e-1167.4
NC_017168:3535786:353841035384103538769360Yersinia pestis A1122 chromosome, complete genomehypothetical protein5e-1167.4
NC_008149:2517538:252933425293342529693360Yersinia pestis Nepal516, complete genomehypothetical protein5e-1167.4
NC_004088:2691565:269418926941892694548360Yersinia pestis KIM, complete genomehypothetical protein5e-1167.4
NC_005810:1663672:166663416666341666993360Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein5e-1167.4
NC_017511:852260:859658859658860251594Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative phage associated protein2e-1065.9
NC_011002:564654:579186579186579788603Burkholderia cenocepacia J2315 chromosome 3, complete sequenceputative phage baseplate assembly protein gpV1e-0652.8