Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1376899 Shigella boydii Sb227, complete genome

Start: 1376899, End: 1377228, Length: 330

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014562:1698253:171815217181521718502351Pantoea vagans C9-1 chromosome, complete genomeBaseplate assembly protein W (GpW)3e-22103
NC_020064:871338:890360890360890710351Serratia marcescens FGI94, complete genomephage baseplate assembly protein W3e-21100
NC_014837:2458780:248291824829182483268351Pantoea sp. At-9b chromosome, complete genomeGPW/gp25 family protein7e-2199
NC_020209:3262000:328467032846703285014345Pseudomonas poae RE*1-1-14, complete genomehypothetical protein3e-2097.4
NC_014837:3739408:376377737637773764136360Pantoea sp. At-9b chromosome, complete genomeGPW/gp25 family protein2e-1994.4
NC_003198:4453457:448624444862444486603360Salmonella enterica subsp. enterica serovar Typhi str. CT18,phage baseplate assembly protein2e-1994.4
NC_015061:1598920:162609716260971626447351Rahnella sp. Y9602 chromosome, complete genomeGPW/gp25 family protein2e-1891.3
NC_012962:4942000:494767749476774948018342Photorhabdus asymbiotica, complete genomephage baseplate assembly protein2e-1890.9
NC_009648:3803622:381534038153403815687348Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage baseplate protein3e-1890.5
NC_014311:1507945:151433815143381514685348Ralstonia solanacearum PSI07 chromosome, complete genomebacteriophage P2 Baseplate assembly protein GPW4e-1890.1
NC_016845:1773416:179485017948501795212363Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,baseplate assembly protein W1e-1788.6
NC_012967:2105251:210955621095562109903348Escherichia coli B str. REL606 chromosome, complete genomebaseplate assembly protein W2e-1787.4
NC_014228:3022903:303870430387043039045342Xenorhabdus nematophila ATCC 19061, complete genomeBaseplate assembly protein W (GpW)3e-1787
NC_016818:1605918:162987916298791630229351Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completephage baseplate assembly protein W9e-1785.5
NC_014306:103545:128161128161128484324Erwinia billingiae Eb661, complete genomePhage baseplate assembly protein9e-1785.5
NC_017047:1551836:157753815775381577888351Rahnella aquatilis HX2 chromosome, complete genomeGPW/gp25 family protein1e-1685.1
NC_012416:1332409:134240713424071342742336Wolbachia sp. wRi, complete genomebaseplate assembly protein W, putative2e-1684.7
NC_005810:1663672:166699016669901667289300Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein1e-1582
NC_008149:2517538:252969025296902529989300Yersinia pestis Nepal516, complete genomehypothetical protein1e-1582
NC_017168:3535786:353876635387663539065300Yersinia pestis A1122 chromosome, complete genomehypothetical protein1e-1582
NC_017265:2306500:231470923147092315008300Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,phage-like protein1e-1582
NC_010981:314745:325234325234325569336Wolbachia pipientis, complete genomebaseplate assembly protein GpW1e-1581.6
NC_010981:425387:449950449950450285336Wolbachia pipientis, complete genomebaseplate assembly protein GpW1e-1581.6
NC_004088:2691565:269456926945692694844276Yersinia pestis KIM, complete genomehypothetical protein1e-1581.6
NC_010981:242500:251613251613251948336Wolbachia pipientis, complete genomeBaseplate assembly protein GpW3e-1580.5
NC_010981:314745:353334353334353669336Wolbachia pipientis, complete genomebaseplate assembly protein GpW3e-1580.5
NC_011740:2737467:275878727587872759140354Escherichia fergusonii ATCC 35469, complete genomeputative baseplate assembly protein W3e-1580.1
CP002797:1960000:197547819754781975810333Escherichia coli NA114, complete genomeputative phage baseplate assembly protein1e-1375.5
NC_002978:618723:631906631906632232327Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW5, baseplate assembly protein W, putative1e-1375.1
NC_012416:573202:587349587349587684336Wolbachia sp. wRi, complete genomebaseplate assembly protein W, putative1e-1375.1
NC_012416:1079661:109380810938081094143336Wolbachia sp. wRi, complete genomebaseplate assembly protein W, putative1e-1375.1
NC_012416:753500:770840770840771175336Wolbachia sp. wRi, complete genomebaseplate assembly protein W, putative3e-1373.9
NC_012751:1988280:199939719993971999732336Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completephage T4-like baseplate assembly protein with lysozyme activity3e-1373.6
NC_017505:1013311:102453110245311024857327Neisseria meningitidis alpha710 chromosome, complete genomephage baseplate assembly protein W1e-1271.6
NC_017511:852260:860248860248860574327Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative phage associated protein3e-1270.5
NC_011035:933269:943837943837944163327Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeputative phage associated protein3e-1270.5
NC_012724:1892000:191292319129231913297375Burkholderia glumae BGR1 chromosome 1, complete genomePhage baseplate assembly protein2e-1168.2